PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0601
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 252aa    MW: 28171 Da    PI: 9.1082
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0601genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY919.2e-2982141159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK+ k+++ pr+Y++C +a gCpvkkkv+r+ ed+++v+ tYeg+Hnh+
  Gh_D05G0601  82 VKDGFQWRKYGQKVTKDNPSPRAYFKCFMApGCPVKKKVQRCVEDKSIVVATYEGQHNHD 141
                  58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-2976141IPR003657WRKY domain
PROSITE profilePS5081126.68277143IPR003657WRKY domain
SuperFamilySSF1182903.14E-2579142IPR003657WRKY domain
SMARTSM007745.0E-3282142IPR003657WRKY domain
PfamPF031068.3E-2483141IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSPDYDKEKV EALEAELDCL QKENEALGLM FETMSRKYIM LHQAYLHQKS NKRQRLEVPA  60
AAGSKASQVF VKTDPRDQSL IVKDGFQWRK YGQKVTKDNP SPRAYFKCFM APGCPVKKKV  120
QRCVEDKSIV VATYEGQHNH DVDSTAAGKS LLASCSSAIF SGTRSIPFPP LDNPFRPTIT  180
LDLTLSGSDL QNHRNLPSFM HDYSTSNDDG NNKKKKIEDY VASFTKDPNF TLALAAAVAR  240
SIKTEHPKPS PP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2160142176Probable WRKY transcription factor 4
2lex_A3e-2160142176Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.66740.0leaf
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698340.0KF669834.1 Gossypium hirsutum WRKY transcription factor 70 (WRKY70) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443387.10.0PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A2P5Q5Z20.0A0A2P5Q5Z2_GOSBA; Uncharacterized protein
STRINGGorai.009G062400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156101014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.19e-44WRKY DNA-binding protein 40