PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0674
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 234aa    MW: 26023.7 Da    PI: 6.919
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0674genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603e-19180217136
         GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 
                  C+  nC+t +Tp+WRrgp g+ktLCnaCG++yrk+g+k
  Gh_D05G0674 180 CTnyNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEGEK 217
                  55559******************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.7E-13176224No hitNo description
Gene3DG3DSA:3.30.50.102.4E-14176224IPR013088Zinc finger, NHR/GATA-type
SMARTSM004012.0E-12176227IPR000679Zinc finger, GATA-type
PfamPF003208.0E-17180217IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.756184230IPR000679Zinc finger, GATA-type
CDDcd002021.71E-13184229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDNSPWFNQA AAEMNGQNND NNNAGNSRVD LTLKLGLPLF DPLQNPALYH NIQKGPVNEG  60
AMPEAPQQHF NGGQYAAWPS PDQIGNGSSA HNMNYPNVFN NFSGPSVEFP PYDTTNSYNY  120
VTPPPPPPLH KLPPNSYTLL DVPPRRAAQL QQREFESSSG LGLGQGQRGY GLYNDPNKRC  180
TNYNCNTNDT PMWRRGPLGP KTLCNACGIK YRKEGEKRKA REGRDGEQQF DLNE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5800476e-50JX580047.1 Gossypium hirsutum clone NBRI_GE12403 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016684785.11e-173PREDICTED: GATA transcription factor 29-like
TrEMBLA0A1U8J3651e-171A0A1U8J365_GOSHI; GATA transcription factor 29-like
STRINGGorai.009G070200.11e-148(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.15e-20GATA transcription factor 29