PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0675
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 684aa    MW: 74442.1 Da    PI: 8.2502
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0675genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.7e-09489514227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  kt+lC+ f+    Ck+Gd+C+FaHg+
  Gh_D05G0675 489 KTRLCSKFSTPEGCKFGDKCHFAHGE 514
                  8***********************96 PP
2zf-CCCH34.53.4e-11651675126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+lC +f++ G C +G+rC+FaHg
  Gh_D05G0675 651 FKTKLCENFSK-GSCTFGERCHFAHG 675
                  69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF087438.8E-24237326IPR014854Non-structural maintenance of chromosome element 4, C-terminal
PfamPF146083.1437447No hitNo description
PROSITE profilePS501036.578437450IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-13485517IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7486517IPR000571Zinc finger, CCCH-type
SMARTSM003560.0026487514IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526487515IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-6489514IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.05E-14550628IPR004088K Homology domain, type 1
SMARTSM003222.7E-11557627IPR004087K Homology domain
PROSITE profilePS5008414.508558622IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.7E-15558626IPR004088K Homology domain, type 1
PfamPF000131.3E-10560623IPR004088K Homology domain, type 1
CDDcd001051.13E-13560623No hitNo description
Gene3DG3DSA:4.10.1000.101.9E-15649682IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.831650677IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6650676IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-8650680IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8651675IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MRRNVKKEKQ TDKGDASAEP VRTKVAGVAR DESADVESNQ PNREEDAGDR RVLRSKYLAV  60
MTKISDAREE ISNVDSNKFN IIINEVDNLH QQVSKPREQV ADAEALLGLT NTLATSVKSI  120
SCEGISVADF VNCLIREFGK STRSLETQEN EQISIDWKEI GVAVSPFFRT CKGICTMLGP  180
MSNELKQRKP MVTRKRAVRP TDTTRPDEVD ETGAEEKTDT DRNMAVMFEI LRRKRQVKLE  240
SLILNRSSFA QTVENLFALS FLVKDGRAKM VVNGSGSHIV SPKNAPAASS IASGEAAYSH  300
FVFRFDFKDW KVMMNAVPVG EELMPHREDS HPTLSQAEPA ANSSGASTTT PIRKLSRNRG  360
LILQESIVDD SPEPDDANKG PGIGRCQPSH ILALLFLSLG FRCSPNGVWW WTQESEARGC  420
LERQWRLQEI QASTSGCQFG ESCHFLHYVP GGIKAVSQML GNNPALPAAA RNSVVPPSFP  480
DGSSPPAVKT RLCSKFSTPE GCKFGDKCHF AHGEWELGKR TGPAYEDPRS MGPMPGRMAG  540
RLEPPSPGFG AAASFGASAT AKISIDASLA GAIIGKNGVN SKHICRVTGA KLSIRENESD  600
PSSRNIELEG TFDQIKQASA MVHELIINVG SASGSSMKNT SKSGSGSGNN FKTKLCENFS  660
KGSCTFGERC HFAHGTEELR KPGM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.198320.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, rosette leaves and floral buds. {ECO:0000269|PubMed:19737979}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447523.10.0PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X1
SwissprotQ9C6891e-124NSE4A_ARATH; Non-structural maintenance of chromosomes element 4 homolog A
TrEMBLA0A0D2TL060.0A0A0D2TL06_GOSRA; Non-structural maintenance of chromosomes element 4
STRINGGorai.009G070400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-44C3H family protein
Publications ? help Back to Top
  1. Watanabe K, et al.
    The STRUCTURAL MAINTENANCE OF CHROMOSOMES 5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage in Arabidopsis thaliana.
    Plant Cell, 2009. 21(9): p. 2688-99
    [PMID:19737979]