PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0772
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 136aa    MW: 16242.9 Da    PI: 4.6118
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0772genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-071359246
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     + W+t E +l+ +a+  ++ +   +W +Ia ++  g+++k++ +++ +
      Gh_D05G0772 13 NEWSTLENKLFEHAFLVFPEEtsyRWQKIADRIS-GKSAKEVEEHFDM 59
                     68*****************99*************.**********966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2E-41163IPR001005SANT/Myb domain
PfamPF002494.2E-61360IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-101368IPR009057Homeodomain-like
CDDcd001679.01E-41461No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MNPQNQNNNN LTNEWSTLEN KLFEHAFLVF PEETSYRWQK IADRISGKSA KEVEEHFDML  60
LHDVYEIEAG RIEIPRYADD SSMLLSNWNS NNQIYFTSKS KHQLDNERKE GSPWTEEEHK  120
YVNSFFLTYL ELNSFI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442385.16e-85PREDICTED: protein RADIALIS-like 4 isoform X1
RefseqXP_012442386.16e-85PREDICTED: protein RADIALIS-like 4 isoform X2
TrEMBLA0A2P5QQ351e-83A0A2P5QQ35_GOSBA; Uncharacterized protein
STRINGGorai.009G080900.12e-83(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2450834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-25MYB family protein