PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0839
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 251aa    MW: 27761 Da    PI: 4.7897
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0839genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.2e-1656106155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + ++GVr+++   +Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a ++l+g
  Gh_D05G0839  56 PVFRGVRQRR-GSKWVSEIREPYK---KSRIWLGTFLSPEMAARAYDVAVLALRG 106
                  579****998.899*******765...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-956106IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2057116IPR016177DNA-binding domain
SMARTSM003804.0E-3057120IPR001471AP2/ERF domain
PROSITE profilePS5103221.44357114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2857116IPR001471AP2/ERF domain
PRINTSPR003671.7E-95869IPR001471AP2/ERF domain
CDDcd000181.64E-2958116No hitNo description
PRINTSPR003671.7E-996116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEYLEIDSSS CKPCSPDSEL SSSSSTSSAY DLPLMVVSSS HKRKAGRKKF KETRHPVFRG  60
VRQRRGSKWV SEIREPYKKS RIWLGTFLSP EMAARAYDVA VLALRGKSAA LNFPDSASVL  120
PRAKSSSPKD IQIAAFAAAE AFKPITSTDI DPQPVGCSSS TSVSTENDEE KSLLDDGSMW  180
DRSWSLEATN TNDNEWNYGF MDEEALFNMP GLLDSMAEGL LLSSPAALQA QVYDCDDDVA  240
STFNIDLWRH Y
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.68850.0leaf
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR2332550.0KR233255.1 Gossypium barbadense C-repeat binding factor 6-like protein (CBF6L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440588.10.0PREDICTED: ethylene-responsive transcription factor ERF024-like
TrEMBLA0A0N9K6G80.0A0A0N9K6G8_GOSBA; C-repeat binding factor 6-like protein
STRINGGorai.009G087700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2219245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-46C-repeat/DRE binding factor 1