PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0856
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 289aa    MW: 31150.6 Da    PI: 6.4174
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0856genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00046114136123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C++sF++   L  H  +H
  Gh_D05G0856 114 YECKTCNRSFPSFQALGGHRASH 136
                  99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.8E-13113138IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.512114141IPR007087Zinc finger, C2H2
SMARTSM003550.06114136IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.14E-9114136No hitNo description
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SuperFamilySSF576676.14E-9190217No hitNo description
PROSITE profilePS501579.536195222IPR007087Zinc finger, C2H2
SMARTSM003550.11195217IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-10195219IPR007087Zinc finger, C2H2
PROSITE patternPS000280197217IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MQAQPDFEVS NIDHQALIMK GKRTKRQRSS SPFGVTVTSS SSSACGGGGG VAEEYNSISS  60
PVTSGEIYES TEEEEDMANC LIMLAQSDGP KRRSNIEEKQ EMVTATNKAE VYAYECKTCN  120
RSFPSFQALG GHRASHKKPK GATADEKKPL FLAFKDHGVE DADQFNRESP AVLALQVGNN  180
NNKTNCHGNK GNKIHECSIC GSEFLSGQAL GGHMRRHRAA ASNQAAVSVD TTSIPIESGN  240
GDGTKPRNIL ALDLNLPAPE DDLRDAKFQF GAPQQAIVFT TPALIDCHY
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016689174.10.0PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X42e-69ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A1U8JLI60.0A0A1U8JLI6_GOSHI; zinc finger protein ZAT5-like
TrEMBLA0A2P5QSP40.0A0A2P5QSP4_GOSBA; Uncharacterized protein
STRINGGorai.009G090200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-59C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]