PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0920
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 473aa    MW: 54366.3 Da    PI: 6.1173
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0920genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS33.65.1e-11200252355
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 
                  +lL++c+ av+  d++ a++lL +++  +sp+gd ++Rla+yf+++L+ rl++
  Gh_D05G0920 200 SLLTQCVLAVAVYDQRIATELLGKIRYYSSPYGDGTERLAHYFAKGLEIRLNE 252
                  79************************************************997 PP
2GRAS191.17.3e-59252469156374
         GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                  e++e+tg rL++++e+++vpfefn+ +akr+e+++ eeL+++++E l+Vn++++l +l+d+sv l+s+r+ vLkl+k+l+P++++    + ++n + F
  Gh_D05G0920 252 ERIEATGGRLRRYCENVNVPFEFNA-IAKRWETIRAEELNIEKDELLVVNCMYRLRNLPDDSVMLNSPRNMVLKLIKRLNPDLFIQGVVNGNYNFPFF 348
                  7899*********************.7*********************************************************************** PP

         GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                   +rf ea+ ++sa+fd lea+++ e+ +r  +Er  +gr++ nv+a eg er  r et+++W+ r ++aGF++++l++++ + a+++l+  + + + +
  Gh_D05G0920 349 INRFREAFFHFSAMFDILEANVGGEDPDRLLLERGTFGRDAINVIAYEGMERSDRPETYKQWQLRNQKAGFRQLSLEQNILNRARTVLKSDYHKDFDI 446
                  ******************************************************************************************99888*** PP

         GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
                  e + +++++gWk+r + ++S+W+
  Gh_D05G0920 447 EVDGKWMLQGWKGRVIHALSCWK 469
                  **********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.664252449IPR005202Transcription factor GRAS
PfamPF035142.5E-56252469IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MAENPVNGSN CRVDPGSAKS NNHPGSNSEG NCPYGNENAD FSYAVLNYIN DVLMEEDVEG  60
RPCMLQDCLA LQAAEKAFYD VLTQKYPSSP PHFHHNLQVP NKSTWHYDPH DDFDSLEERR  120
KNKHLAMAVE GSSEEHMFDE VVLVKTGNGV SMSCPLYEGY QNREANSKLE DNEEVKRNNR  180
KRIPAKKQAG NGKEMVDLGS LLTQCVLAVA VYDQRIATEL LGKIRYYSSP YGDGTERLAH  240
YFAKGLEIRL NERIEATGGR LRRYCENVNV PFEFNAIAKR WETIRAEELN IEKDELLVVN  300
CMYRLRNLPD DSVMLNSPRN MVLKLIKRLN PDLFIQGVVN GNYNFPFFIN RFREAFFHFS  360
AMFDILEANV GGEDPDRLLL ERGTFGRDAI NVIAYEGMER SDRPETYKQW QLRNQKAGFR  420
QLSLEQNILN RARTVLKSDY HKDFDIEVDG KWMLQGWKGR VIHALSCWKP VQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-19252470170380Protein SCARECROW
5b3h_A4e-19252470169379Protein SCARECROW
5b3h_D4e-19252470169379Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016689089.10.0PREDICTED: scarecrow-like protein 14
TrEMBLA0A2P5QR640.0A0A2P5QR64_GOSBA; Uncharacterized protein
STRINGGorai.009G098200.11e-156(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15599616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.13e-84GRAS family protein