PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0940
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 312aa    MW: 33906.8 Da    PI: 10.0144
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0940genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.72.9e-3965125262
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  +e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++
  Gh_D05G0940  65 PEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKKK 125
                  67899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-3549121IPR003851Zinc finger, Dof-type
PfamPF027011.1E-3268123IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.46969123IPR003851Zinc finger, Dof-type
PROSITE patternPS01361071107IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MVFPSVPVYL DPPNWQQARL NHQQGASSEN PQLQPLPTDH HVGASGSIRA GSMADRARLA  60
KVPQPEAALK CPRCESTNTK FCYFNNYSLT QPRHFCKTCR RYWTRGGALR NVPVGGGCRR  120
NKKKKSSSSS KPSGSAERQS GSNSINTVIP SEITAHLPHQ TPHLPFMASL QNFSQYGIGN  180
IGLNFGGIHG QIGATSGGSE RSDMGFQIGT NSDMSNAILS VRSGSHQQFP FIEPTNGLYP  240
LQSEYIGASP SMVEESQLLR STSSSSRVSQ RGPVKMENNN QGLNLSRPLL GVSDQNNQYW  300
GGNSWTDLSG LK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00281DAPTransfer from AT2G28810Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447825.10.0PREDICTED: dof zinc finger protein DOF2.2-like isoform X1
TrEMBLA0A0D2QCQ80.0A0A0D2QCQ8_GOSRA; Uncharacterized protein
STRINGGorai.009G100100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.12e-54OBF-binding protein 3