PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G1028

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 155aa MW: 17340.7 Da PI: 8.1089

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G1028	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.3	3.9e-41	6	102	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca+dC++apyfp+++p++fa+vhk+FGasn++k l+a ++r da+ss+vyeA+ar+rdPvyG+vg i+ lq+q++ql+ +l +++ Gh_D05G1028 6 PCAACKFLRRRCAEDCIFAPYFPSQDPHRFAIVHKVFGASNISKALQA---NQRGDAASSMVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLTVAQ 100 7*****************************************9999...99***************************************9998 PP DUF260 99 ee 100 +e Gh_D05G1028 101 TE 102 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.603	5	103	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-40	6	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MRSCSPCAAC KFLRRRCAED CIFAPYFPSQ DPHRFAIVHK VFGASNISKA LQANQRGDAA 60 SSMVYEANAR VRDPVYGCVG AISYLQNQVS QLQMQLTVAQ TELLRIKMQQ DLPSPPYLAP 120 TNNFNNIDSQ PEYLNFPSST NVIQDSSLKT ESIWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-44	5	105	10	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-44	5	105	10	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016684755.1	1e-110	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	2e-57	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A1U8J335	1e-108	A0A1U8J335_GOSHI; LOB domain-containing protein 12-like
STRING	Gorai.009G112900.1	1e-106	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	9e-60	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]