PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G1106

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 502aa MW: 55686.8 Da PI: 6.0633

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G1106	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.3	7e-33	262	316	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav++L G+e+AtPk +l+lm+v+gLt++hvkSHLQkYRl Gh_D05G1106 262 KPRMRWTPELHECFVEAVSKLDGPERATPKGVLKLMNVEGLTIYHVKSHLQKYRL 316 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.456	259	319	IPR017930	Myb domain
SuperFamily	SSF46689	1.06E-17	260	316	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.1E-31	261	317	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-25	262	317	IPR006447	Myb domain, plants
Pfam	PF00249	4.3E-9	264	315	IPR001005	SANT/Myb domain
Pfam	PF14379	4.1E-20	352	399	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MVIGNQRSFI EGSGAYKFAI MVLFWEDIVY CLKMMMYFDL NVVSPIHNFP SRDLEGPSWL 60 TGECSSLFPL KKNELNSGPS SPSSPSSHAK GAFSHSSVFC TSLYLSSSST SETQRQLGNF 120 PFLPHPPTCH QLFSAVDSSK SPVVFTEDLC NPYDVDHSEV IMKDFLNFPG DARDDGCFHG 180 MHCERDNFIL TEQVELHFLS DELDIAIDDH GENPRVEEIY ESPQPSSKPT VGLTCNRNSA 240 SATPSMSAAV SPALSGPAAV HKPRMRWTPE LHECFVEAVS KLDGPERATP KGVLKLMNVE 300 GLTIYHVKSH LQKYRLAKYM PEKKEEKKTW SSGEKKAALS IGESDGKKNG GMQITEALQM 360 QIEVQKQLHE QLELQRLLQL RIEEQARYLQ KILEEQQKAG SALNPTLSLS APTDPPSQNS 420 ELQQPSSPSA VVSASQHSES KTESSSASSL PSKHKANGVG VNECKTESRL KRFRFEDKPE 480 SAIDEAVVWK ILCNNSFTQL NS

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MVIGNQRSFI EGSGAYKFAI MVLFWEDIVY CLKMMMYFDL NVVSPIHNFP SRDLEGPSWL  60
TGECSSLFPL KKNELNSGPS SPSSPSSHAK GAFSHSSVFC TSLYLSSSST SETQRQLGNF  120
PFLPHPPTCH QLFSAVDSSK SPVVFTEDLC NPYDVDHSEV IMKDFLNFPG DARDDGCFHG  180
MHCERDNFIL TEQVELHFLS DELDIAIDDH GENPRVEEIY ESPQPSSKPT VGLTCNRNSA  240
SATPSMSAAV SPALSGPAAV HKPRMRWTPE LHECFVEAVS KLDGPERATP KGVLKLMNVE  300
GLTIYHVKSH LQKYRLAKYM PEKKEEKKTW SSGEKKAALS IGESDGKKNG GMQITEALQM  360
QIEVQKQLHE QLELQRLLQL RIEEQARYLQ KILEEQQKAG SALNPTLSLS APTDPPSQNS  420
ELQQPSSPSA VVSASQHSES KTESSSASSL PSKHKANGVG VNECKTESRL KRFRFEDKPE  480
SAIDEAVVWK ILCNNSFTQL NS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-27	262	319	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-27	262	319	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-27	262	319	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-27	262	319	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-27	262	319	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-27	262	319	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-27	262	319	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-27	262	319	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.11405	0.0	boll\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016688850.1	0.0	PREDICTED: protein PHR1-LIKE 1-like
Refseq	XP_016688851.1	0.0	PREDICTED: protein PHR1-LIKE 1-like
Refseq	XP_016688852.1	0.0	PREDICTED: protein PHR1-LIKE 1-like
Swissprot	Q949U2	1e-125	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A1U8JEV8	0.0	A0A1U8JEV8_GOSHI; protein PHR1-LIKE 1-like
STRING	Gorai.009G120900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6786	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	2e-96	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]