PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G1472

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 185aa MW: 20650.3 Da PI: 8.6929

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G1472	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	42	100	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGalrnvPvG+grrk k Gh_D05G1472 42 PDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKP 100 68999***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-30	41	99	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-32	44	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.258	46	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	48	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MVMASHEGQG IKLFGATITL HAGRQVKEEH KEDDHSKADK RPDKIIPCPR CKSMETKFCY 60 FNNYNVNQPR HFCKGCQRYW TAGGALRNVP VGAGRRKAKP VPGRGLAGFQ EGYLFDGSSG 120 VHVHQFELEG MVLDEWHSAA ANGGFRQVFP MKRRRISCSG DHGDSCGLSV DQNQPTSEES 180 MIQFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	155	KRRRI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation. Not involved in direct flowering time regulation. {ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By red or far-red light. Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269\|PubMed:19619493}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616238	2e-52	JX616238.1 Gossypium hirsutum clone NBRI_GE60732 microsatellite sequence.
GenBank	JX964726	2e-52	JX964726.1 Gossypium hirsutum clone NBRI_TRANS-995 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445710.1	1e-139	PREDICTED: dof zinc finger protein DOF1.5-like
Refseq	XP_016688063.1	1e-139	PREDICTED: dof zinc finger protein DOF1.5-like
Swissprot	P68350	2e-60	DOF15_ARATH; Dof zinc finger protein DOF1.5
TrEMBL	A0A0D2S2B8	1e-137	A0A0D2S2B8_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8JHD1	1e-137	A0A1U8JHD1_GOSHI; dof zinc finger protein DOF1.5-like
STRING	Gorai.009G162500.1	1e-138	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2809	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	7e-63	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Bueso E, et al. Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration. Plant J., 2016. 87(6): p. 583-96 [PMID:27227784]