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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_D05G1480 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | bHLH | ||||||||
| Protein Properties | Length: 275aa MW: 30496.7 Da PI: 8.4776 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 38.2 | 2.5e-12 | 76 | 122 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++h+e+ErrRR+riN +++Lr+llP + +K++Ka+ L ++++ +k+L
Gh_D05G1480 76 KNHSEAERRRRERINAHLDTLRTLLPCR-----QKMDKATLLGEVIKQLKEL 122
58*************************9.....8************999988 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 15.866 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 5.4E-10 | 76 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 4.66E-4 | 76 | 124 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 2.7E-12 | 77 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 2.88E-13 | 77 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 1.2E-10 | 79 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 275 aa Download sequence Send to blast |
MAAYSFNNNF SSGNCYSGIF DPFSRDLGLC NESSHGGSLS VPQSLVLDHE KGELVKAPVK 60 VRKKSVSEEK IIAALKNHSE AERRRRERIN AHLDTLRTLL PCRQKMDKAT LLGEVIKQLK 120 ELKKNATEAS KGLLVPMDDD DEVRVEPCNV NEADGTFSFK ALICCDYRPQ LLTDLRQALD 180 ALPLPITIVK SEISTLGSRL KTDFIFTASY RSTSSVANVG NDDDGTDARR FLACSIRKAL 240 NSVLEKASIS PEHSPFLTFP NKRRRISYID SPSSS |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 81 | 86 | ERRRRE |
| 2 | 261 | 265 | KRRRI |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012447485.1 | 0.0 | PREDICTED: putative transcription factor bHLH107 | ||||
| TrEMBL | A0A0D2UN84 | 0.0 | A0A0D2UN84_GOSRA; Uncharacterized protein | ||||
| STRING | Gorai.009G163400.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM15581 | 10 | 17 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G68810.1 | 2e-24 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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