PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1500
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 156aa    MW: 18004.3 Da    PI: 8.8084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1500genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-201060255
          AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr+++ +g+++AeIrd      k +r++lg+++taeeAa a+++a+++++g
  Gh_D05G1500 10 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTYDTAEEAAMAYDKAALRIRG 60
                 7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-32969IPR001471AP2/ERF domain
SMARTSM003801.4E-371074IPR001471AP2/ERF domain
CDDcd000182.25E-291068No hitNo description
PROSITE profilePS5103224.0391068IPR001471AP2/ERF domain
PfamPF008471.3E-151060IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-241069IPR016177DNA-binding domain
PRINTSPR003672.0E-111122IPR001471AP2/ERF domain
PRINTSPR003672.0E-113450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MRVEKLATRH YRGVRRRPWG KYAAEIRDSS RKGARVWLGT YDTAEEAAMA YDKAALRIRG  60
PKANLNFPLH TIAKAMGIDD TKTNFNRCLS TTNGQGTEDF TDHRKRECRA WEQNSEVVMV  120
EQPQLKRMAS IEECGYDVFW FQDLGSDYLE SLLSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-28971163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-28971466ATERF1
3gcc_A6e-28971466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442702.11e-112PREDICTED: ethylene-responsive transcription factor ERF091-like
SwissprotO495155e-35ERF91_ARATH; Ethylene-responsive transcription factor ERF091
TrEMBLA0A2P5Q2D61e-112A0A2P5Q2D6_GOSBA; Uncharacterized protein
STRINGGorai.009G165400.11e-112(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.13e-27ERF family protein