PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1520
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 781aa    MW: 86123.4 Da    PI: 6.4033
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1520genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.8e-07258277525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  +C+ffar G+C  G++CkF+H
  Gh_D05G1520 258 ICDFFAR-GWCVKGSSCKFIH 277
                  6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0089253279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929253280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6253277IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-5258277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4258277IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MPLSTPAAVP RADKDDERRT ASTTRPEFNS SDMEIDDDDD EERGEELQVS SKRNDGSNIM  60
ESKGHVGHSG SDPLSAPGRS EMRIPSKTLY VGESSTSFNL CSLPDEPWAT QREDLCKNYD  120
GSKYPISGKR PANEKAIQEY GVNGQDARVI FERKAHEDHH EQHTSSTVNE IMYEATNLIS  180
VDGKEVAIND VISILGRYHS GVGVSSHLGF EQKSKQMGMQ TEDNKRSMKS RSSAPQTSTG  240
SLYPGAEFNS ENKRPALICD FFARGWCVKG SSCKFIHIKD SGSNPSQQSE EDAAVADEKI  300
AVQLDEGIQN TAEKSRPPSP GSSDRLPSSA RNRTALSPLI QSKDKSIGTS LGSQQFQAST  360
DDSEPSKDVR QTSIGKSLPA DNYFKPGLLS DRGSSTFGNG FLPKHIPYLS GSDTYLGNTY  420
KENQKYRVST WLASLPFSSS SSACSVDAQK MLKNDREHHT SCPSSLLRGF SSLSSFEPEN  480
FPATDIAKDP LHLVEYRIKF SSEDWEPSVP FRPSFFITFG PSSPQREYDP LRDSIDLSNV  540
GERSLKFSFS SQGPSLLDVA YPPTYDDSTS AGRLVPACNA DKITASCHGR YVENLVNNNC  600
YTSGKDSTTD ANDWTSAADM QNGTLVKEEI SSVASHVKDI SKASKADTDR DARHRRDGFR  660
CKKDLKVDRV REKNEIDIEH KADGEALKES KAMRHFHAAL VDLIKELLKP TWREGHLSKD  720
AHNRIVKKAV NKVIGTVQPL QIPLTFESVK QYLSASQSKI ASLVQVSVFD LRVGMVYTSV  780
I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016688051.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
RefseqXP_016688052.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
TrEMBLA0A1U8JCL10.0A0A1U8JCL1_GOSHI; protein FRIGIDA-ESSENTIAL 1-like isoform X1
STRINGGorai.009G167600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156171016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-28C3H family protein