PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1526
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 340aa    MW: 37136.2 Da    PI: 7.4302
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1526genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1252.4e-393898262
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 +++ lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++
  Gh_D05G1526 38 QQQVLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 98
                 68999*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-272196IPR003851Zinc finger, Dof-type
PfamPF027017.3E-344096IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5254296IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104480IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MIISSTANQW PQDHIDEKDL MASTARLMEK PSHEQQQQQQ VLKCPRCDSS NTKFCYYNNY  60
SLSQPRHFCK ACKRYWTRGG TLRNVPVGGG CRKNKRVKRP AASATGGASP TSGANIANTP  120
SQPQMDVSST SSHHINPLFY GLANNPSDIN LPFPRFSSRV LGAETVTGYD LQPDLNALGL  180
GFSSGIVSSD TGDGDYRNGF NTNPTKQIQD VVTSNPLLPS YSNIFGSSST TTTPTIASLL  240
ASTLYQHKFM NGGVKNTQLP NQLQALSPFQ DLQMTGNGEN GVTMKDIKVE EAQSRMDWNV  300
PCQNQLDQMG LSDPTDYWST TSVGAWNDPA NFESSVTSLI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.215148e-88boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098695688e-88
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4449326e-54AM444932.2 Vitis vinifera contig VV78X179258.2, whole genome shotgun sequence.
GenBankFQ3830106e-54FQ383010.1 Vitis vinifera clone SS0ABG35YE14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446505.10.0PREDICTED: dof zinc finger protein DOF1.4-like
RefseqXP_016688040.10.0PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBLA0A0D2QHR50.0A0A0D2QHR5_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JCL50.0A0A1U8JCL5_GOSHI; dof zinc finger protein DOF1.4-like
STRINGGorai.009G168300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.23e-50Dof family protein