PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1541
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LSD
Protein Properties Length: 206aa    MW: 22162.6 Da    PI: 8.2584
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1541genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD129.31.5e-09103127125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+Cr lLsYP G +  +C++C tV
  Gh_D05G1541 103 CGSCRQLLSYPEGTRQAKCSCCETV 127
                  ************************9 PP
2zf-LSD135.81.4e-11141165125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  C +C  lL+YP+G++sV+C++C  V
  Gh_D05G1541 141 CDSCALLLMYPYGSSSVKCSSCLSV 165
                  **********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.6E-14100130IPR005735Zinc finger, LSD1-type
PfamPF069435.7E-7103127IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.4E-9138166IPR005735Zinc finger, LSD1-type
PfamPF069434.3E-8141165IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MAAAMSLSTT KVHKKLVFYP RAPGLTFSPT AVSADFFPDL TRIPCRIVLT QVSSFSSHLS  60
SRPPPPLVFS GSDPYPVSDR VDTSTASQIA PSPEMAQMAQ MVCGSCRQLL SYPEGTRQAK  120
CSCCETVNFV LEAHQVGLVR CDSCALLLMY PYGSSSVKCS SCLSVTEIGG LQTLSDKAFA  180
FWNFAVSSFK AVLTLQSAKI IGNFSF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.183910.0boll| ovule| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431022e-58AC243102.1 Gossypium arboreum clone GM226J06-jme, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5QMH75e-78A0A2P5QMH7_GOSBA; Uncharacterized protein
STRINGGorai.009G169900.16e-72(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136112226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.16e-26lsd one like 2