PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G1549

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 340aa MW: 37904.6 Da PI: 9.7062

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G1549	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.9	1.1e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++ ++ Gh_D05G1549 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-TIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIVTSnGN 111 79**************************.89***********8888999*********************************998677 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kk Lvfy+g+ pkg kt+W+mheyrl Gh_D05G1549 112 QKVGVKKALVFYRGKPPKGIKTNWIMHEYRL 142 88*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.68E-66	8	176	IPR003441	NAC domain
PROSITE profile	PS51005	62.807	15	176	IPR003441	NAC domain
Pfam	PF02365	3.0E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MESTDSSSAS AHPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVTIIAEV DLYKFDPWEL 60 PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPIVTSNG NQKVGVKKAL 120 VFYRGKPPKG IKTNWIMHEY RLIDNNSTSK PQIVDLPNRK ASLRLDDWVL CRIYKKNNTQ 180 RPMETDKEYT MEGMLATQLP TSSHQNLNAL TSKATSYGSL LQHEDNFFEG ILTEGMRSSS 240 NISQLAVSSS SKQNPPMAFP VKRTLPPQYW NEPSSTGSQS GKRFQQGDIN CSSRGGNIDD 300 TNSFVSLLNQ LPQNTPFYPG SMVGSLGDGV SRQQFILPGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-76	15	179	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-76	15	179	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-76	15	179	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-76	15	179	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-75	15	179	20	171	NAC domain-containing protein 19
3swm_B	1e-75	15	179	20	171	NAC domain-containing protein 19
3swm_C	1e-75	15	179	20	171	NAC domain-containing protein 19
3swm_D	1e-75	15	179	20	171	NAC domain-containing protein 19
3swp_A	1e-75	15	179	20	171	NAC domain-containing protein 19
3swp_B	1e-75	15	179	20	171	NAC domain-containing protein 19
3swp_C	1e-75	15	179	20	171	NAC domain-containing protein 19
3swp_D	1e-75	15	179	20	171	NAC domain-containing protein 19
4dul_A	9e-76	15	179	17	168	NAC domain-containing protein 19
4dul_B	9e-76	15	179	17	168	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269\|PubMed:16055634}.
Uniprot	TISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269\|PubMed:15100403, ECO:0000269\|PubMed:16055634, ECO:0000269\|PubMed:18849494}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012440667.1	0.0	PREDICTED: NAC transcription factor 25
Swissprot	Q9LD44	1e-110	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A0D2UNR0	0.0	A0A0D2UNR0_GOSRA; Uncharacterized protein
STRING	Gorai.009G170700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-113	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]