PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1681
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 548aa    MW: 61297.4 Da    PI: 6.3773
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1681genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS399.63.1e-1221785481374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++ L++c +a++++d+  ++ l+  l++++s +g+p+qRl ay++e+L+arl +s+s++y+al+++e +   sse ++++++++ ++P+ kf++   
  Gh_D05G1681 178 LKQILVACGQALHDDDMLTVTGLMHVLEKMVSVSGEPIQRLGAYVLEGLRARLESSGSNIYRALKCKEPT---SSELMSYMHILFRICPYWKFAYTSG 272
                  5789*****************************************************************9...99*********************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N  I e +e e ++HiiDf+i qG+QW+ L+ aLa+Rp+gpps+RiTg+++++s+  +   l+ +g+rL++fA++ +v+fef+  +a +  +++le+L
  Gh_D05G1681 273 NVVIKEVLEYEGKIHIIDFQIAQGTQWMFLIAALAKRPGGPPSIRITGIDDSQSNhaRGGGLHIVGQRLSEFARSYNVSFEFHD-AAMSGCEIQLEHL 369
                  ***************************************************9988889999***********************.899999******* PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +v+pgEalaVnl + lh+++desvs+ ++rd++L+lvkslsPkvv+++eqe+++n+++F+ r le+l+yysa+f+s+++  pr++++ri+ E+++++r
  Gh_D05G1681 370 KVQPGEALAVNLPYVLHHMPDESVSIWNHRDRLLRLVKSLSPKVVTLTEQESNTNTSPFFSRYLETLDYYSAMFESIDVACPRDDKQRINAEQHCVAR 467
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +ivn++aceg er+erhe  +kWr+r+++aGF+++pl +++++ ++ +l++++ + yr+ee++g+l+lgW +r++ ++SaWr
  Gh_D05G1681 468 DIVNMIACEGPERVERHELHGKWRSRFMMAGFSQYPLISSVTMAVRDMLKEYDHN-YRLEEREGALYLGWVNRAMATFSAWR 548
                  *****************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.131152529IPR005202Transcription factor GRAS
PfamPF035141.1E-119178548IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MRTSPKHQNP ATIRGLYDQP VKENDPFYLS RIQMLDNNAC SDTGVQGTNV SFQTCKDQVF  60
TLESSMAGAG FVAYDSPSAV SISSSRSPFS PHGSQSCLSD PRPSPDNTYG SPYSGSSVVD  120
DSNKLNHKLR ELELSLLGPE SDTVDSCNGC FITGDHQAAS MASFNCAQLV DLVPKFNLKQ  180
ILVACGQALH DDDMLTVTGL MHVLEKMVSV SGEPIQRLGA YVLEGLRARL ESSGSNIYRA  240
LKCKEPTSSE LMSYMHILFR ICPYWKFAYT SGNVVIKEVL EYEGKIHIID FQIAQGTQWM  300
FLIAALAKRP GGPPSIRITG IDDSQSNHAR GGGLHIVGQR LSEFARSYNV SFEFHDAAMS  360
GCEIQLEHLK VQPGEALAVN LPYVLHHMPD ESVSIWNHRD RLLRLVKSLS PKVVTLTEQE  420
SNTNTSPFFS RYLETLDYYS AMFESIDVAC PRDDKQRINA EQHCVARDIV NMIACEGPER  480
VERHELHGKW RSRFMMAGFS QYPLISSVTM AVRDMLKEYD HNYRLEEREG ALYLGWVNRA  540
MATFSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-541805486375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.197330.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}.
UniprotTISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016690260.10.0PREDICTED: scarecrow-like protein 13 isoform X2
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A1U8JJ100.0A0A1U8JJ10_GOSHI; scarecrow-like protein 13 isoform X2
STRINGGorai.009G184100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13