PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1842
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 85aa    MW: 9863.12 Da    PI: 9.7547
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1842genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-071457344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+   +l+ +a + + ++   +W ++a+ +g  ++ ++++ ++
      Gh_D05G1842 14 YWTPKQNKLFERALAVYDKDtpdRWQKVAAAVG-EKSVEEVRRHY 57
                     5********************************.9*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.3E-61163IPR001005SANT/Myb domain
SuperFamilySSF466898.58E-131369IPR009057Homeodomain-like
PfamPF002492.6E-61457IPR001005SANT/Myb domain
CDDcd001676.07E-61557No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MASSITLSRD SNSYWTPKQN KLFERALAVY DKDTPDRWQK VAAAVGEKSV EEVRRHYEIL  60
VRDLMYIESG QIPIPNYKST GSNRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-31883479RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.151961e-138ovule| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440620.18e-58PREDICTED: protein RADIALIS-like 6
RefseqXP_012440621.18e-58PREDICTED: protein RADIALIS-like 6
RefseqXP_012440622.18e-58PREDICTED: protein RADIALIS-like 6
RefseqXP_012440623.18e-58PREDICTED: protein RADIALIS-like 6
RefseqXP_016687583.18e-58PREDICTED: protein RADIALIS-like 6
RefseqXP_016733942.18e-58PREDICTED: protein RADIALIS-like 6
RefseqXP_017645104.18e-58PREDICTED: protein RADIALIS-like 6
SwissprotQ1A1732e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0D2UQS42e-56A0A0D2UQS4_GOSRA; Uncharacterized protein
TrEMBLA0A1U8N4C02e-56A0A1U8N4C0_GOSHI; protein RADIALIS-like 6
TrEMBLA0A2P5YFL42e-56A0A2P5YFL4_GOSBA; Uncharacterized protein
STRINGGorai.009G201200.13e-57(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.27e-37RAD-like 6