PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1898
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 331aa    MW: 36791.3 Da    PI: 9.2604
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1898genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.4e-32133186255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Gh_D05G1898 133 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 186
                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.61E-15130187IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-28131187IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23133186IPR006447Myb domain, plants
PfamPF002492.1E-7134185IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MFLSSNTIMR TAPFPDLSLQ ISPPSVSDCK AKEMAYDVLS GKSIYSDRSS TTDSGSSGSD  60
LSHENGYINP GLGEPTLSLG FEMADLGPPH LQQPRNPHHL HQQHHYQPQI YGRDFKRSAR  120
TMNGGVKRSI RAPRMRWTTT LHAHFVHAVQ LLGGHERATP KSVLELMNVK DLTLAHVKSH  180
LQMYRTVKST DKGSGQGQTD MSLNQRVGIF DLDGRLSSPK ADRNASYSLK LSTPSPQTIP  240
QRTQSDSWPS SMETNNFSVS NRGNGLTFKP NDTKVDGDKA VLHMSDRMKE RLDSSSMSPS  300
DMFLNLEITL GRPSWQMDYA ESSNELTLLK C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-17134188357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-17134188357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-17134188357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-17134188357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-17134188458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2719891e-106KP271989.1 UNVERIFIED: Populus trichocarpa isolate Potri.014G037200_BESC-125 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445063.10.0PREDICTED: probable transcription factor KAN4
TrEMBLA0A0D2QJW00.0A0A0D2QJW0_GOSRA; Uncharacterized protein
STRINGGorai.009G207200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65722844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.15e-69G2-like family protein