PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1913
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 244aa    MW: 27551.7 Da    PI: 8.9368
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1913genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591e-183580147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l ++v+++G+++W++I+r++  gR++k+c++rw + 
      Gh_D05G1913 35 KGPWSAEEDRILTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 80
                     79*****************************9.***********985 PP
2Myb_DNA-binding52.98.5e-1789131347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++ Ed+ ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
      Gh_D05G1913  89 PFSQAEDDTILAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 131
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.2893085IPR017930Myb domain
SuperFamilySSF466891.69E-3133128IPR009057Homeodomain-like
SMARTSM007177.2E-173483IPR001005SANT/Myb domain
PfamPF002498.5E-183580IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-243688IPR009057Homeodomain-like
CDDcd001678.78E-153779No hitNo description
SMARTSM007171.0E-1486134IPR001005SANT/Myb domain
PROSITE profilePS5129420.24787136IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2289135IPR009057Homeodomain-like
CDDcd001671.21E-1089132No hitNo description
PfamPF002495.2E-1489131IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEAVNGCSSS TSSSDASSSD SYLSARGSNK AEKIKGPWSA EEDRILTRLV ERYGPRNWSL  60
ISRYIKGRSG KSCRLRWCNQ LSPNVEHRPF SQAEDDTILA AHARYGNRWA TIARLLPGRT  120
DNAVKNHWNS TLKRRAREGQ HHHQQQQQQE HQQRILRVTH QPMDGGDHCA LGSTELMIEE  180
EALTALTLAP PGSGVSSRSA VVVAERRREE RVPAEFWDVM RDVIAREVRE YMSSMLSAET  240
SAFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-42321361105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.106207e-38boll| ovule| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in leaves from the third leaf to rosette leaves from six-week old plants. Expression follows a development-dependent gradient in successive leaves. {ECO:0000269|PubMed:9678577}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. Expressed in dry seeds (PubMed:9678577). Expressed in root vasculature, root tips and lateral root (PubMed:17675404). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:9678577}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3941671e-133GQ394167.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1132 SSR marker CGR6715 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016729603.10.0PREDICTED: transcription factor MYB44-like
SwissprotQ9SN125e-57MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A1U8MVP41e-180A0A1U8MVP4_GOSHI; transcription factor MYB44-like
STRINGGorai.009G208900.11e-179(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145531122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.18e-58myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]