PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G1992

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 310aa MW: 34793.5 Da PI: 5.4816

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G1992	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.5	3.6e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+l +s Gh_D05G1992 9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFS 58 79*******************************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-37	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.025	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-30	2	78	IPR002100	Transcription factor, MADS-box
CDD	cd00265	8.13E-38	2	75	No hit	No description
PRINTS	PR00404	3.7E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-26	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSLFSGN 60 KSIEEILGRY VNLPEHERGR LRNKEFPIKA LGKLRDEADQ TSQPTSSPEC INPQLEEFQQ 120 EIINCKSRIA NMEKRLRIFE GDASEITTLI QADYHEQILE ETLKQVRLHK QVLEEKFTSP 180 GPPPTTKGKL PPEAGDVNGF VTTSSSSISN HFLNFLDSNG LLPPGCASII DEAPAVAEIL 240 PPQSTDLLNE EEINVEEQLS LARGLENHNN VQRPEFGQVI DVNLSPWTQL YPKGSIWGPN 300 KLVHGWAFEA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
1tqe_R	1e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
1tqe_S	1e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_A	1e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_B	1e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_C	1e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_D	1e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_E	1e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_F	1e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016687798.1	0.0	PREDICTED: agamous-like MADS-box protein AGL104 isoform X1
Swissprot	Q9LM46	2e-47	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A1U8JGL6	0.0	A0A1U8JGL6_GOSHI; agamous-like MADS-box protein AGL104 isoform X1
STRING	Gorai.009G216900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16199	6	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	9e-50	AGAMOUS-like 104

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]