PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G2053

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 154aa MW: 16675.7 Da PI: 8.1266

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G2053	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	65.4	1.4e-20	42	89	1	48
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 +CaaCk+lrr+Ca++Cvlapyfp ++p+kfa++h +FGasn++k+l+ Gh_D05G2053 42 PCAACKILRRRCADKCVLAPYFPPTEPAKFAIAHLVFGASNIIKFLQV 89 7********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.593	41	146	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-19	42	90	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MEYSEPIPTP TSSSPSLSPN SSISSNSPPS PPLSLPLVVI SPCAACKILR RRCADKCVLA 60 PYFPPTEPAK FAIAHLVFGA SNIIKFLQVV LWSFLQLNNI PCHVLSLLEM IIRLILFATV 120 STAQLSLPLL LISPAENQLT SVVEKKPHCT DSLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-16	41	87	10	56	LOB family transfactor Ramosa2.1
5ly0_B	3e-16	41	87	10	56	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616907	2e-45	JX616907.1 Gossypium hirsutum clone NBRI_GE61864 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012462233.1	9e-32	PREDICTED: LOB domain-containing protein 1-like
Refseq	XP_017619062.1	1e-31	PREDICTED: LOB domain-containing protein 1-like
TrEMBL	A0A0D2W0R8	5e-74	A0A0D2W0R8_GOSRA; Uncharacterized protein
STRING	Gorai.012G185900.1	9e-75	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20654	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	2e-27	LOB domain-containing protein 11