PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2218
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 493aa    MW: 54656.5 Da    PI: 5.4125
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2218genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.14.7e-1121084861374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetsekn...sseelaalklfsevsPilkf 93 
                  +v+lL+++Aea+   +++la+ +L rl+el+sp++ ++m+RlaayfteAL++ l +s+ + +k l +  ++++++   +++ laa++l++++sP++kf
  Gh_D05G2218 108 MVHLLMAAAEALMGANKSLARVILVRLKELVSPSDgTNMERLAAYFTEALQSLLEGSGGGHSKHLiTNGPQHHRDkhrEADMLAAFQLLQDMSPYVKF 205
                  689***************************888766********************998888877433333333346799****************** PP

         GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                  +h+taNqaIleav +++r+Hi+D+di++G+QW++L+qaL sR+egpp  +lRiT++++ ++g  s  +++etg+rL+ fA+++g pf+f+    ++ e
  Gh_D05G2218 206 GHFTANQAILEAVTHDRRIHIVDYDIMEGIQWASLMQALVSRKEGPPtpHLRITALSRGSNGwrSIGTIQETGRRLTTFASSIGQPFSFHQCRLDSDE 303
                  *******************************************887666*********99999999*************************9999*** PP

         GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerik 284
                  ++++ +L++ +gEal++n++l+l ++ +++ s+     ++L+  k+l+P++v+vve+ea   +++ F+ rf+++l++ysa+fdslea++p + ++r+ 
  Gh_D05G2218 304 TFRPPALKLVRGEALIINCMLNLPHFSHRPPSSVA---SFLSGAKTLNPRLVTVVEEEAGPiGDGGFMGRFIDSLHHYSAVFDSLEAGFPMQCRARAL 398
                  **************************988888877...9*******************9988************************************ PP

         GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                  vEr++lg++i   +++  ++r+e  e+ ++W+e+l+++GF+pv++s  + +qaklll  ++ dgyrvee  ++ +vl Wk+r+L+s+S W+
  Gh_D05G2218 399 VERVILGPQIAGSLTQIYRNRNE--EESGRWSEWLDTMGFNPVSISFANHCQAKLLLGLFN-DGYRVEELaNNRVVLDWKSRRLLSASIWT 486
                  ******************99766..556*********************************.******98477788**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.33582466IPR005202Transcription factor GRAS
PfamPF035141.6E-109108486IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MAMAIDNAFE VDFCSYSTST TTTTTADEDP ACTWNHWGSP VVDWGSLSSE RDEFQDLIES  60
MMDDGTGFEL TRLGHDHETS NSVSVSVSTD TMVADEETNG EDFKGLRMVH LLMAAAEALM  120
GANKSLARVI LVRLKELVSP SDGTNMERLA AYFTEALQSL LEGSGGGHSK HLITNGPQHH  180
RDKHREADML AAFQLLQDMS PYVKFGHFTA NQAILEAVTH DRRIHIVDYD IMEGIQWASL  240
MQALVSRKEG PPTPHLRITA LSRGSNGWRS IGTIQETGRR LTTFASSIGQ PFSFHQCRLD  300
SDETFRPPAL KLVRGEALII NCMLNLPHFS HRPPSSVASF LSGAKTLNPR LVTVVEEEAG  360
PIGDGGFMGR FIDSLHHYSA VFDSLEAGFP MQCRARALVE RVILGPQIAG SLTQIYRNRN  420
EEESGRWSEW LDTMGFNPVS ISFANHCQAK LLLGLFNDGY RVEELANNRV VLDWKSRRLL  480
SASIWTSPPD SDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5810148612379Protein SCARECROW
5b3h_A2e-5810148611378Protein SCARECROW
5b3h_D2e-5810148611378Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269|PubMed:15961668}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016687028.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A1U8JE970.0A0A1U8JE97_GOSHI; nodulation-signaling pathway 2 protein-like
STRINGGorai.009G244200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-163GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]