PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G2344

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 171aa MW: 19881.4 Da PI: 7.8594

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G2344	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.8	6.3e-07	91	153	25	88
FAR1 25 ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 ei++ ++ k+gk++ +++ + r+ +r gCk k +v++e+ d+++++t+ e +HnHe Gh_D05G2344 91 CLEIMDDGYRWRKYGKKKIKNNP--NPRHYYRCSREGCKVKKRVEREReDEQFVITTYEGKHNHE 153 55677888888899999998777..88999999***********999*************7 PP
2	WRKY	98.6	4e-31	95	153	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K++k++++pr+YYrC+ +gC+vkk+ver++ed+++v++tYeg+Hnhe Gh_D05G2344 95 MDDGYRWRKYGKKKIKNNPNPRHYYRCSREGCKVKKRVEREREDEQFVITTYEGKHNHE 153 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.4E-33	83	155	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-27	89	155	IPR003657	WRKY domain
PROSITE profile	PS50811	31.353	90	155	IPR003657	WRKY domain
SMART	SM00774	6.9E-34	95	154	IPR003657	WRKY domain
Pfam	PF03106	2.7E-25	96	153	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MELNRDDHLD VEDFLVLPHL ETHKEPAATC SSLKAKPSVT LSPVNGSCRD LPSNTLCVDY 60 MLQQNYEGYV VERMEGEDAG KFKVAFRTRS CLEIMDDGYR WRKYGKKKIK NNPNPRHYYR 120 CSREGCKVKK RVEREREDEQ FVITTYEGKH NHENPAAATS LPPHQNPLPY H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-26	85	156	7	78	Probable WRKY transcription factor 4
2ayd_A	8e-26	83	157	2	76	WRKY transcription factor 1
2lex_A	9e-26	85	156	7	78	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669816	0.0	KF669816.1 Gossypium hirsutum WRKY transcription factor 77 (WRKY77) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012442775.1	1e-126	PREDICTED: probable WRKY transcription factor 56
TrEMBL	A0A2P5RL07	1e-126	A0A2P5RL07_GOSBA; Uncharacterized protein
STRING	Gorai.009G259600.1	1e-125	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22097	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	5e-28	WRKY DNA-binding protein 51