PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2348
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 592aa    MW: 66789.4 Da    PI: 4.6417
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2348genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.4e-52211472128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  ppGfrFhPtdeelv +yLk+k+ g+kl+l ++i+e+d+yk++P++Lp k  +k+++++w+fFs+rd+ky++  r+nrat +gyWkatgkd++v++ ++
  Gh_D05G2348  21 PPGFRFHPTDEELVLYYLKRKICGRKLKL-DIIRETDVYKWDPEELPaKsILKSGDRQWFFFSPRDRKYPNAARSNRATGHGYWKATGKDRTVTC-NS 116
                  8****************************.99**************96346778999**************************************.99 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vg+kktLvfy+grap ge+tdWvmhey+l
  Gh_D05G2348 117 RTVGVKKTLVFYRGRAPIGERTDWVMHEYTL 147
                  9****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-6015170IPR003441NAC domain
PROSITE profilePS5100555.15620170IPR003441NAC domain
PfamPF023651.1E-2721147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MTVAAKAATT GSCFGEDQVW PPGFRFHPTD EELVLYYLKR KICGRKLKLD IIRETDVYKW  60
DPEELPAKSI LKSGDRQWFF FSPRDRKYPN AARSNRATGH GYWKATGKDR TVTCNSRTVG  120
VKKTLVFYRG RAPIGERTDW VMHEYTLDEE ELKRCQNVKD YYALYKLYKK SGPGPKNGEQ  180
YGAPFKEEEW ADEEYASKAV DVITPVKQPN EAFPDDVEKA KNQIQSPLND IEEFMRQFAA  240
EPALPQPQAH FDNILPRLAG EEEIQSTLLD TSPRDVLLPK PVEVVHDHAS FELSQSPTSR  300
LQLQEAPEDA SVSDQFEQIP QICEEDFLEI DDLTSNVEKP VENGLQFNDW DGLGEFDLYH  360
DAAMFLQDIG PIEQGIVPFS YTENMINQLQ LQSNAFGNNQ QVQSQLNTIG DNQPQLNAFE  420
DGILNQVDYH LPFQSFGNEM ERQLQMDQIN GSIWINDQSG DVFTPSGSNL GNASSSSGLV  480
YNGNNQDEGD KNGEGASRFS TAMWSFVDSI PTTPASASES PSVNRAFERM SSFSRLRMNV  540
RNTNALIVNG GTTARRRSRS KGFFFFSILG ALCAILWFLI GMVRVVRSSI SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-512114716140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.33300.0boll| ovule
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016698297.10.0PREDICTED: NAC domain-containing protein 17-like isoform X4
TrEMBLA0A1U8K7340.0A0A1U8K734_GOSHI; NAC domain-containing protein 17-like isoform X4
STRINGGorai.009G260000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-123NAC domain containing protein 17