PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G2434

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 139aa MW: 15687 Da PI: 10.8685

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G2434	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.7	3.3e-15	70	129	4	63
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 + r + ++kNRe+A sR+RK+a+ +eLe++v+ L++eN +L+k ++ + +l +++ Gh_D05G2434 70 DLRLKLMMKNRESAAQSRARKQAYKKELEREVAHLKEENAKLRKHQKKVMAAINQLPKKN 129 568899******************************************999999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.0E-12	67	131	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.829	69	125	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.89E-17	72	116	No hit	No description
Pfam	PF00170	3.3E-13	72	129	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.38E-9	72	120	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.9E-12	73	125	No hit	No description
PROSITE pattern	PS00036	0	74	89	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MEEVGKDISL SSLNGISLQG KHGTLISTAA TNPAFPSMIL QDFFGHTLQQ YTSNNILGKR 60 AQGNNENPDD LRLKLMMKNR ESAAQSRARK QAYKKELERE VAHLKEENAK LRKHQKKVMA 120 AINQLPKKNR LSRSLTTPF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016676367.1	2e-88	PREDICTED: protein FD-like
TrEMBL	A0A1U8IE73	4e-87	A0A1U8IE73_GOSHI; protein FD-like
STRING	Gorai.009G269300.1	1e-48	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1934	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35900.1	1e-24	bZIP family protein