PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2571
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 195aa    MW: 22065.2 Da    PI: 9.879
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2571genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.22.1e-181765149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 k ien+  r +tfskRr gi KK  ELS+LC+ e++ iifs+ gk +++
  Gh_D05G2571 17 KMIENQDHRFITFSKRRSGIYKKIGELSTLCGSEILFIIFSPAGKPFTF 65
                 68*******************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.366969IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-23979IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-26968IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-171131IPR002100Transcription factor, MADS-box
PfamPF003192.5E-201965IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-173146IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-174667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MANTGKKTKG KQKIEIKMIE NQDHRFITFS KRRSGIYKKI GELSTLCGSE ILFIIFSPAG  60
KPFTFGHPSI EFIANRFLNG NIPVIDDMHA LIEAHCTVRI NKLIQLYNEV QSQIDASNET  120
QRVLAQQITS GTDSNRWWET PLDQLNPREL YERYSHFSKL LDLFHISRSK KIATASSTVA  180
PTGPAKDAPT NFPLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hbx_A4e-14271372SERUM RESPONSE FACTOR
1hbx_B4e-14271372SERUM RESPONSE FACTOR
1hbx_D4e-14271372SERUM RESPONSE FACTOR
1hbx_E4e-14271372SERUM RESPONSE FACTOR
1k6o_B5e-14266266Serum response factor
1k6o_C5e-14266266Serum response factor
1srs_A4e-14271372PROTEIN (SERUM RESPONSE FACTOR (SRF))
1srs_B4e-14271372PROTEIN (SERUM RESPONSE FACTOR (SRF))
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016684252.11e-145PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1U8J1N41e-144A0A1U8J1N4_GOSHI; agamous-like MADS-box protein AGL62
STRINGGorai.009G284300.11e-127(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.11e-28AGAMOUS-like 57