PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2967
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 300aa    MW: 33845.6 Da    PI: 8.7068
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2967genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.5e-322073255
      G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                 prlrWtp+LH++F++av++LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+
  Gh_D05G2967 20 PRLRWTPQLHHCFLHAVDRLGGQHKATPKLVLQLMDVKGLTISHVKSHLQMYRS 73
                 8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3471676IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-311676IPR009057Homeodomain-like
SuperFamilySSF466892.69E-151875IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-232073IPR006447Myb domain, plants
PfamPF002493.4E-82172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRCGKHNGA VRQYIRSKVP RLRWTPQLHH CFLHAVDRLG GQHKATPKLV LQLMDVKGLT  60
ISHVKSHLQM YRSMRSDYGR QVKSSTYERR QSFDDNHDFD GRVVPIEESC SHLIYNNPFP  120
SKRHGICETR VSNTCSFDDY KQTMDARKRI KQDNGGYVWD QTINDSHSLG QPLALSLPHD  180
LYSLNAFRSY SLATKVEVED QKRAHEQDAK LVERNIRRQE EEDGGGGGCE LSLSLSLQYH  240
NTSSTSEISS SEAFSSYLRS NYKDCWGSSS TSTSSSSSSS SSVTRRSAIN LDLSIALCGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.194210.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016685653.10.0PREDICTED: putative Myb family transcription factor At1g14600
TrEMBLA0A1U8JAF60.0A0A1U8JAF6_GOSHI; putative Myb family transcription factor At1g14600
STRINGGorai.009G329400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.16e-36G2-like family protein