PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G3059
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 163aa    MW: 18181.1 Da    PI: 9.8309
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G3059genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-071161491247
                      HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      l++a +++G g W+ I +++g ++ + q++s+ qk+
      Gh_D05G3059 116 LIEALRLYGRG-WRQIEEHVG-TKFAVQIRSHAQKF 149
                      79*********.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF514457.51E-173496IPR017853Glycoside hydrolase superfamily
PfamPF001282.2E-93894IPR006047Glycosyl hydrolase, family 13, catalytic domain
Gene3DG3DSA:3.20.20.801.0E-143897IPR013781Glycoside hydrolase, catalytic domain
PfamPF002494.7E-6116148IPR001005SANT/Myb domain
CDDcd001674.97E-4116150No hitNo description
SuperFamilySSF466892.27E-5116153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
GQKIQGSQSI VAKLTAFLSS GVSTASPPSI VNPPVLAACW FSSVVPSNSS VVSIHRYHVT  60
NFFAPSSRFG TPDDLKSLID KAHELGILVL MDIVHSCKYY FLIVALGTES IWWVGLIEAL  120
RLYGRGWRQI EEHVGTKFAV QIRSHAQKFF SKAHCFEFIR RFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3amk_A1e-135796235274Os06g0726400 protein
3aml_A9e-145796235274Os06g0726400 protein
3vu2_A1e-1357962352741,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic
3vu2_B1e-1357962352741,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.248661e-162ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5RVL39e-42A0A2P5RVL3_GOSBA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.11e-16MYB_related family protein