PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G3197
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 223aa    MW: 25740.5 Da    PI: 9.0939
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G3197genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1676.3e-52111351128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lp+GfrFhP+deelv++yL +kv+ ++  +++ + evd++k+ePwd+p++++ ++kewyf+s+rd+kyatg r+nrat+sgyWkatgkdk+v+s kg+
  Gh_D05G3197  11 LPAGFRFHPRDEELVCDYLMRKVALTD--TFQLMIEVDLNKCEPWDIPETARVNSKEWYFYSQRDRKYATGLRTNRATTSGYWKATGKDKAVHS-KGT 105
                  799********************9988..346799*************88888999**************************************.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                   vg++ktLvfy+grapkg+k+dWvmhe+rl
  Gh_D05G3197 106 IVGMRKTLVFYHGRAPKGTKSDWVMHEFRL 135
                  ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-583156IPR003441NAC domain
PROSITE profilePS5100555.17411156IPR003441NAC domain
PfamPF023656.5E-2712135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSNIRLVEAK LPAGFRFHPR DEELVCDYLM RKVALTDTFQ LMIEVDLNKC EPWDIPETAR  60
VNSKEWYFYS QRDRKYATGL RTNRATTSGY WKATGKDKAV HSKGTIVGMR KTLVFYHGRA  120
PKGTKSDWVM HEFRLQPTSN VSTLKEDWVL CRMLHKTKEI SKNPSIMGSS YDDIASSPLP  180
PLMDSFISFH QPNLDDKYEQ QVPDSPICPQ TKGTLFSPIW TQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-55616212171NO APICAL MERISTEM PROTEIN
1ut4_B8e-55616212171NO APICAL MERISTEM PROTEIN
1ut7_A8e-55616212171NO APICAL MERISTEM PROTEIN
1ut7_B8e-55616212171NO APICAL MERISTEM PROTEIN
3swm_A8e-55616215174NAC domain-containing protein 19
3swm_B8e-55616215174NAC domain-containing protein 19
3swm_C8e-55616215174NAC domain-containing protein 19
3swm_D8e-55616215174NAC domain-containing protein 19
3swp_A8e-55616215174NAC domain-containing protein 19
3swp_B8e-55616215174NAC domain-containing protein 19
3swp_C8e-55616215174NAC domain-containing protein 19
3swp_D8e-55616215174NAC domain-containing protein 19
4dul_A8e-55616212171NAC domain-containing protein 19
4dul_B8e-55616212171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441072.11e-154PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 21/22
SwissprotQ84TE63e-88NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2P5SK141e-168A0A2P5SK14_GOSBA; Uncharacterized protein
STRINGGorai.009G354900.11e-168(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36192859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-90NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]