PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G3209
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 191aa    MW: 21320.3 Da    PI: 4.8497
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G3209genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.78.2e-151966148
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                 kri n+ +r vtfskR++g+l KA  LS  ++ ++ v+i+s++g++++
  Gh_D05G3209 19 KRIPNQKKRWVTFSKRKKGLLSKAARLSSITGEDIGVVIISEQGRIHT 66
                 79*******************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.9321171IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-151170IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-161280IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-121333IPR002100Transcription factor, MADS-box
PfamPF003194.1E-132066IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-123348IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-124869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDEARPGRRG TGRRRIELKR IPNQKKRWVT FSKRKKGLLS KAARLSSITG EDIGVVIISE  60
QGRIHTSDNA DAVIDRYLSI EAGKDNNGDG RKDDAGTSNQ GIVADDNNYD DGVTLRLFPQ  120
DIGQDDDHND DGRFGNGRVM DTQGLNLNQW DNVWKINEGE IKGENCFIDL NKPPHNDDDD  180
GAGDDTMIHF L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016684029.11e-136PREDICTED: serum response factor homolog B-like
TrEMBLA0A1U8J7551e-135A0A1U8J755_GOSHI; serum response factor homolog B-like
STRINGGorai.009G356000.11e-115(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1836949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65060.14e-13MIKC_MADS family protein