PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G3293

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

YABBY

Protein Properties

Length: 199aa MW: 22862.2 Da PI: 9.3208

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G3293	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	177.4	8.5e-55	7	160	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102 s++eq+Cy+ Cn Cn ilav+vP ++lf++vtvrCG Ct+l s+n+a + q + ++ ++ + ++e ++ ++++ +++ + ++ Gh_D05G3293 7 SAPEQLCYIPCNLCNIILAVNVPCSCLFETVTVRCGQCTNLCSINMAASFQSRGGKEI--------QVPNYTSSEYRIELGSSSSKGKNKLPKRPRIM 96 789**************************************999998888777664........34444444444444444333333333333333 PP YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++e v+rPP+kr r+Ps yn+fikeeiqrik +nPdishreafs+aaknWa fP+ihfgl Gh_D05G3293 97 NTTTQER----VVNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDISHREAFSTAAKNWARFPHIHFGL 160 3333333....369**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.2E-62	8	160	IPR006780	YABBY protein
SuperFamily	SSF47095	1.26E-6	100	153	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MSSLNNSAPE QLCYIPCNLC NIILAVNVPC SCLFETVTVR CGQCTNLCSI NMAASFQSRG 60 GKEIQVPNYT SSEYRIELGS SSSKGKNKLP KRPRIMNTTT QERVVNRPPD KRHRAPSLYN 120 QFIKEEIQRI KLNNPDISHR EAFSTAAKNW ARFPHIHFGL MLETATQPKL NDVSNDFIFK 180 VYNYVFNFTF FFLLMHERN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.21659	1e-180	boll

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ526781	7e-40	HQ526781.1 Gossypium herbaceum clone NBRI_A_1939 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016678125.1	1e-126	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_016678126.1	1e-127	PREDICTED: axial regulator YABBY 5-like isoform X2
Refseq	XP_016678127.1	1e-127	PREDICTED: axial regulator YABBY 5-like isoform X2
Swissprot	Q8GW46	7e-74	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1U8IJ43	1e-125	A0A1U8IJ43_GOSHI; axial regulator YABBY 5-like isoform X2
TrEMBL	A0A1U8IJ53	1e-125	A0A1U8IJ53_GOSHI; axial regulator YABBY 5-like isoform X1
TrEMBL	A0A2P5S784	1e-125	A0A2P5S784_GOSBA; Uncharacterized protein
STRING	Gorai.009G367100.1	1e-126	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-73	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]