PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G3503

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 385aa MW: 42753.4 Da PI: 7.0714

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G3503	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.4	0.00014	275	313	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L++l+ + +K + a++L ++ eYIk L Gh_D05G3503 275 VRKEKMGDRISALQQLVSPF-----GKTDTASVLSEVFEYIKFL 313 5778999*********98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.51E-5	257	317	No hit	No description
PROSITE profile	PS50888	11.636	264	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.7E-8	274	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-10	274	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MADEFNPGPN WWDRTAAPSS SSSSSSSVLN NSLGTFGGWN PEMADIKARS PMDSISSSSS 60 SSVSASDLHM MGLGLSSQAM DWNQAFMRGD HKSETSFKSM LEEHNLNASN PNYHQEMMGF 120 KHQSSSQFSP CSSDSTIINN MDSTSLYGSP STILQGLLGT ENQTYENRSI NYQYGMNNND 180 PLLPNSWSKV PQFLKNSPQK NGQLHFSNNA PFWNPSAAAT SPMVDHRPPG FFPSFPTPNF 240 DEKPKNNISE VKKNGNETSS KRPRNEIPSL PAFKVRKEKM GDRISALQQL VSPFGKTDTA 300 SVLSEVFEYI KFLHEQINVL STPYKKTGAT TQQQQQTCEK SKDFEGFKHD LRSRGLCLVP 360 VSSTFPMTHE STVDFWTPTF GGTFR

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MADEFNPGPN WWDRTAAPSS SSSSSSSVLN NSLGTFGGWN PEMADIKARS PMDSISSSSS  60
SSVSASDLHM MGLGLSSQAM DWNQAFMRGD HKSETSFKSM LEEHNLNASN PNYHQEMMGF  120
KHQSSSQFSP CSSDSTIINN MDSTSLYGSP STILQGLLGT ENQTYENRSI NYQYGMNNND  180
PLLPNSWSKV PQFLKNSPQK NGQLHFSNNA PFWNPSAAAT SPMVDHRPPG FFPSFPTPNF  240
DEKPKNNISE VKKNGNETSS KRPRNEIPSL PAFKVRKEKM GDRISALQQL VSPFGKTDTA  300
SVLSEVFEYI KFLHEQINVL STPYKKTGAT TQQQQQTCEK SKDFEGFKHD LRSRGLCLVP  360
VSSTFPMTHE STVDFWTPTF GGTFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016685072.1	0.0	PREDICTED: transcription factor bHLH123-like isoform X2
Swissprot	Q8GXT3	3e-66	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A1U8J412	0.0	A0A1U8J412_GOSHI; transcription factor bHLH123-like isoform X2
STRING	Gorai.009G429100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4024	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-57	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]