PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G3644

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 508aa MW: 56638.8 Da PI: 6.3445

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G3644	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	441.3	7e-135	137	507	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l+elL +cA+a++++d++l++ l+++l++++s +g+p qRl ay++e+L arla+s+s++yk+l+++e + sse l+++++++e++P++kf+++ a Gh_D05G3644 137 LKELLCACAKAIENKDMHLTDCLMTQLRQMVSVSGEPKQRLGAYMLEGLVARLASSGSSIYKSLRCKEPA---SSELLSYMHILYEICPYFKFGYMSA 231 5799***************************************************************9...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N aI ea++ e+rvHiiDf+i qG QW++L+ aLa+Rp+gpps+RiTg+++++s + le +++rL+k+Ae ++vpfef++ +a + +d+++e+L Gh_D05G3644 232 NGAIAEAMKDESRVHIIDFQIAQGSQWLTLIPALAARPGGPPSIRITGIDDSTSAyaRGGGLEIVRQRLSKVAELCKVPFEFHA-AAISATDVQFENL 328 ***********************************************998899999********************.8999***** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 r++pgEa+aVn++++lh+++desv +++rd++L+l kslsPkvv++veqea++n+++F+ rfle+++++ +f+s++++lpr+++eri+vE+++l+r Gh_D05G3644 329 RIQPGEAVAVNFAMMLHHMPDESVGAQNHRDRLLRLAKSLSPKVVTLVEQEANTNTAPFVPRFLETMNHFLPIFESIDVSLPRDHKERINVEQHCLAR 426 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 eivn++aceg er+erhe l+kWr+r+ +aGFkp pls+++++++k+ll+ + + y++e+++g l+lgW++r++v+ +aWr Gh_D05G3644 427 EIVNIIACEGPERVERHELLGKWRSRFIMAGFKPFPLSSFVNSTIKSLLQSYCD-KYTLEDKDGVLFLGWMNRAIVASCAWR 507 *************************************************5.5***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.581	111	488	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.4E-132	137	507	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MQTSQNHKVT VQEMESNCWP PKLEQYCTLD SSSGVQNSSS TASFSPNGSP VSQPNKSCPM 60 DLRRSPDNTC SPVSDSCVTD NEHDLSHMIR QLETAMLGTD SDNIDVHAIM ASGRSTEVSI 120 ESERWKYMME MIAQGDLKEL LCACAKAIEN KDMHLTDCLM TQLRQMVSVS GEPKQRLGAY 180 MLEGLVARLA SSGSSIYKSL RCKEPASSEL LSYMHILYEI CPYFKFGYMS ANGAIAEAMK 240 DESRVHIIDF QIAQGSQWLT LIPALAARPG GPPSIRITGI DDSTSAYARG GGLEIVRQRL 300 SKVAELCKVP FEFHAAAISA TDVQFENLRI QPGEAVAVNF AMMLHHMPDE SVGAQNHRDR 360 LLRLAKSLSP KVVTLVEQEA NTNTAPFVPR FLETMNHFLP IFESIDVSLP RDHKERINVE 420 QHCLAREIVN IIACEGPERV ERHELLGKWR SRFIMAGFKP FPLSSFVNST IKSLLQSYCD 480 KYTLEDKDGV LFLGWMNRAI VASCAWRC

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MQTSQNHKVT VQEMESNCWP PKLEQYCTLD SSSGVQNSSS TASFSPNGSP VSQPNKSCPM  60
DLRRSPDNTC SPVSDSCVTD NEHDLSHMIR QLETAMLGTD SDNIDVHAIM ASGRSTEVSI  120
ESERWKYMME MIAQGDLKEL LCACAKAIEN KDMHLTDCLM TQLRQMVSVS GEPKQRLGAY  180
MLEGLVARLA SSGSSIYKSL RCKEPASSEL LSYMHILYEI CPYFKFGYMS ANGAIAEAMK  240
DESRVHIIDF QIAQGSQWLT LIPALAARPG GPPSIRITGI DDSTSAYARG GGLEIVRQRL  300
SKVAELCKVP FEFHAAAISA TDVQFENLRI QPGEAVAVNF AMMLHHMPDE SVGAQNHRDR  360
LLRLAKSLSP KVVTLVEQEA NTNTAPFVPR FLETMNHFLP IFESIDVSLP RDHKERINVE  420
QHCLAREIVN IIACEGPERV ERHELLGKWR SRFIMAGFKP FPLSSFVNST IKSLLQSYCD  480
KYTLEDKDGV LFLGWMNRAI VASCAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-63	141	507	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.19880	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016684975.1	0.0	PREDICTED: scarecrow-like protein 5
Refseq	XP_016684976.1	0.0	PREDICTED: scarecrow-like protein 5
Swissprot	Q8H125	0.0	SCL5_ARATH; Scarecrow-like protein 5
TrEMBL	A0A1U8J3Q5	0.0	A0A1U8J3Q5_GOSHI; scarecrow-like protein 5
STRING	Gorai.009G446100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM621	28	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50600.1	0.0	scarecrow-like 5

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]