PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G3665

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 170aa MW: 19339.6 Da PI: 9.9313

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G3665	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.8	6.7e-10	120	156	9	47
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++++a k++G g W+ I +++g ++ + q++s+ qk+ Gh_D05G3665 120 HQRFLEALKLYGRG-WRQIEEHVG-TKYAVQIRSHAQKF 156 89**********.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF51658	7.01E-17	10	94	IPR013022	Xylose isomerase-like, TIM barrel domain
Gene3D	G3DSA:3.20.20.150	3.2E-13	11	68	IPR013022	Xylose isomerase-like, TIM barrel domain
Gene3D	G3DSA:3.20.20.150	1.9E-6	69	94	IPR013022	Xylose isomerase-like, TIM barrel domain
PROSITE profile	PS51294	9.186	114	161	IPR017930	Myb domain
Pfam	PF00249	1.9E-7	120	155	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	3.1E-10	120	159	IPR006447	Myb domain, plants
CDD	cd00167	4.74E-4	120	157	No hit	No description
SuperFamily	SSF46689	3.68E-8	120	159	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MALFWCRVVI EETNSNLDEV VALAKELQGD KIRPLWGTAQ LFMHPRYMHG AATSSELGAA 60 QVKKAMEARF LEAAAAYKKK IGFNGTLLIE PKPQNLPNIS MTGMLQQHLT SCVNMGCLKH 120 QRFLEALKLY GRGWRQIEEH VGTKYAVQIR SHAQKFFSKA HCFEFITRFP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.16006	5e-78	boll\| leaf\| ovule\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023915753.1	7e-44	xylose isomerase-like
Swissprot	Q9FKK7	2e-33	XYLA_ARATH; Xylose isomerase
TrEMBL	A0A1U8J8L7	1e-38	A0A1U8J8L7_GOSHI; Xylose isomerase
STRING	Gorai.009G296100.1	2e-39	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	3e-20	MYB_related family protein

Publications ? help Back to Top
Sahr T,Voigt G,Schimmack W,Paretzke HG,Ernst D Low-level radiocaesium exposure alters gene expression in roots of Arabidopsis. New Phytol., 2005. 168(1): p. 141-8 [PMID:16159328] Holmes-Davis R,Tanaka CK,Vensel WH,Hurkman WJ,McCormick S Proteome mapping of mature pollen of Arabidopsis thaliana. Proteomics, 2005. 5(18): p. 4864-84 [PMID:16247729] Sorin C, et al. Proteomic analysis of different mutant genotypes of Arabidopsis led to the identification of 11 proteins correlating with adventitious root development. Plant Physiol., 2006. 140(1): p. 349-64 [PMID:16377752] Rajjou L, et al. Proteomic investigation of the effect of salicylic acid on Arabidopsis seed germination and establishment of early defense mechanisms. Plant Physiol., 2006. 141(3): p. 910-23 [PMID:16679420] Chibani K, et al. Proteomic analysis of seed dormancy in Arabidopsis. Plant Physiol., 2006. 142(4): p. 1493-510 [PMID:17028149] Hajduch M, et al. Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression. Plant Physiol., 2010. 152(4): p. 2078-87 [PMID:20118269]