PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G3931
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 501aa    MW: 56131.4 Da    PI: 6.0894
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G3931genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like64.12.6e-20206261155
      G2-like   1 kprlrWtpeLHerFveaveqLG.GsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+rl W+ eL ++Fv+av+ L  Gse+  Pk+il++m+ +g+t++h+ SHLQkYRl
  Gh_D05G3931 206 KKRLAWSRELDAKFVKAVQILEkGSENVHPKRILDVMNEPGVTRAHISSHLQKYRL 261
                  78*******************55********************************8 PP
2Response_reg592.6e-206916911111
                   HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HH CS
  Response_reg  11 rellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpe 105
                   ++ l+ +l + +y +v++a+++ e++e+l++++  +D++l+D++  ++++++++++i  e  +lp+i+vta ++ e +++ l  Ga d++ Kpf++e
   Gh_D05G3931  69 LQYLCAVLHNCNY-KVKSASSAVEVIEILRTNKhgIDIVLVDVDTADLNAFKVMETIGLET-NLPVIMVTADSNLENITKGLAHGAVDCIIKPFEME 163
                   677889999999*.***************887778**********************8777.8********************************** PP

                   HHHHHH CS
  Response_reg 106 elvkav 111
                   ++ +++
   Gh_D05G3931 164 QIKNTI 169
                   **9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001562.46E-1548172No hitNo description
SMARTSM004485.5E-1357169IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011025.09758173IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-1468169IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.28E-2168176IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.9E-2368196No hitNo description
SuperFamilySSF466898.78E-14204265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-21205265IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-17206261IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MWKLELARLE YRILSDNGVV QPKKVAFVGS VINKMEEIFL ENLIDPQIDD DHTLKELTVF  60
AFNTQVLSLQ YLCAVLHNCN YKVKSASSAV EVIEILRTNK HGIDIVLVDV DTADLNAFKV  120
METIGLETNL PVIMVTADSN LENITKGLAH GAVDCIIKPF EMEQIKNTIQ SHVASNKTRG  180
QYLNPLPVSN ARMAVKDACC SSKLKKKRLA WSRELDAKFV KAVQILEKGS ENVHPKRILD  240
VMNEPGVTRA HISSHLQKYR LALKKRKADT NKQGLEVEPT NYCLKKREVG NFNADRRRLA  300
VQSFNGVMSP SSSSPDPKKQ SQSLVYSCID GHGPEFQTPD FYYNNHCLET NIQPHNVESE  360
HVSGTTTLSP YFNGVDTKPS IISSAAVYPF PNAVFLEPEA NIAFHSHFDA ISVPNPLYGF  420
TIDCSTDVQY PSSTVFARNS ETHAVQNGTT ISTSDTSSYH YVKPENEVSE TYNSQIECSL  480
FEEESFDWYS LLDDQYLSSL T
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5841053e-69JX584105.1 Gossypium hirsutum clone NBRI_GE17310 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441770.10.0PREDICTED: two-component response regulator ARR10-like
TrEMBLA0A0D2TB120.0A0A0D2TB12_GOSRA; Uncharacterized protein
STRINGGorai.009G006200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2076546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.12e-38response regulator 10