PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0052
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 88aa    MW: 9821.06 Da    PI: 8.4339
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0052genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-08652347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT+   +l+ +a   + ++   +W   a+ +g g+t +++k +++++
      Gh_D06G0052  6 TWTPKQNKLFENALVIYDKEspdRWQNLANAVG-GKTVEEVKMHYYNL 52
                     7******************9*************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.682257IPR017884SANT domain
SMARTSM007173.8E-7355IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-13561IPR009057Homeodomain-like
CDDcd001674.02E-7653No hitNo description
PfamPF002496.5E-6652IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-4656IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MGSSSTWTPK QNKLFENALV IYDKESPDRW QNLANAVGGK TVEEVKMHYY NLVEDIKQIE  60
SGNVPLPPYG KKPGGGSKGY NCMDSVQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-25278681RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016728999.12e-60PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1738e-28RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1U8MTW64e-59A0A1U8MTW6_GOSHI; protein RADIALIS-like 3
TrEMBLA0A2P5RB004e-59A0A2P5RB00_GOSBA; Uncharacterized protein
STRINGGorai.010G010000.12e-59(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-27RAD-like 6