PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G0217

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 414aa MW: 45101.3 Da PI: 6.321

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G0217	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.1	2.1e-10	254	302	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq Gh_D06G0217 254 NSHSLAERVRREKISERMKLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 302 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.1E-17	249	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.87E-11	249	306	No hit	No description
PROSITE profile	PS50888	15.586	251	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.5E-17	252	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-7	254	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-10	257	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MASDGNDDLG FKHHSLMNTN NPLCDKVDGM ALSSMYNTKS SNSSDPFFGS GWDPIVSLNQ 60 SESLGGGSSM VSHSGFANSH YPLLMENQGI CGTSHFSQYQ SDPSFVELVP KIQGFGCGNL 120 SEMVGPMSLP HCTQGYAMNH EGGIERASTN STQSRDDRQI SEEGVVGASP NRKCRKRVHE 180 ANQNADEELK KDPSGESCDV QKEHDSKKQK TEQNATANSR GKQVVKQAKD SSQTGEAPKE 240 NYIHVRARRG QATNSHSLAE RVRREKISER MKLLQELVPG CNKITGKAVM LDEIINYVQS 300 LQQQVEFLSM KLATVNPELN IDLERILSKE ILHSRGGNAA VVGFNPGINL SHPFSSGIFP 360 GTISGIPNTN PQFPPFPPQT VLDNELQNLF QMGFDSSSAM DSLGPIGISF IQAL

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MASDGNDDLG FKHHSLMNTN NPLCDKVDGM ALSSMYNTKS SNSSDPFFGS GWDPIVSLNQ  60
SESLGGGSSM VSHSGFANSH YPLLMENQGI CGTSHFSQYQ SDPSFVELVP KIQGFGCGNL  120
SEMVGPMSLP HCTQGYAMNH EGGIERASTN STQSRDDRQI SEEGVVGASP NRKCRKRVHE  180
ANQNADEELK KDPSGESCDV QKEHDSKKQK TEQNATANSR GKQVVKQAKD SSQTGEAPKE  240
NYIHVRARRG QATNSHSLAE RVRREKISER MKLLQELVPG CNKITGKAVM LDEIINYVQS  300
LQQQVEFLSM KLATVNPELN IDLERILSKE ILHSRGGNAA VVGFNPGINL SHPFSSGIFP  360
GTISGIPNTN PQFPPFPPQT VLDNELQNLF QMGFDSSSAM DSLGPIGISF IQAL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.6289	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016726918.1	0.0	PREDICTED: transcription factor bHLH74-like isoform X1
Refseq	XP_016726919.1	0.0	PREDICTED: transcription factor bHLH74-like isoform X1
TrEMBL	A0A1U8MMV3	0.0	A0A1U8MMV3_GOSHI; transcription factor bHLH74-like isoform X1
STRING	Gorai.010G028200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5196	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	1e-86	bHLH family protein