PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0380
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 421aa    MW: 46681.2 Da    PI: 9.7178
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0380genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00013181203223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp Cg+ F   +nL+ H+ + H
  Gh_D06G0380 181 SCPECGEIFMKAENLELHQAVrH 203
                  6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819958.63E-52475No hitNo description
PROSITE profilePS501579.411180208IPR007087Zinc finger, C2H2
PROSITE patternPS000280182203IPR007087Zinc finger, C2H2
SuperFamilySSF563991.82E-22205420No hitNo description
Gene3DG3DSA:3.90.228.101.7E-19206419IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MAGPTHQRKP SKDTYHNQKK KRRPQPQPQP QKNDKPPSNW SLVKGLFFGK PQQQQQHQQQ  60
QQQQQQQQQQ QQQQQREHVV VDETGKKCKK MRCSGSLCSN TKIMERPVTA SPELNKKRAS  120
LGSVKAPVQH EPNGVVVSSS NVGSFRGLPF TRFSGCYECR MVVDPVLGMA KDPSLRTTIR  180
SCPECGEIFM KAENLELHQA VRHAVSELGP EDTSKNIVEI IFQSSWLKKQ APICQIDRIL  240
KVHNTPKTIS KFEEYRDSIK SKATKHPKKH PRCIADGNEL LRFHCTTLAC SLGLNGSSNL  300
CNSSPNCNVC SIIKNGFKVA QELGNGGGPN GKGILTTATS GKAHDMAAGV EEDNGKQENR  360
AMLVCRVIAG RVKKNMEGSL EDYDSVTVAG GDVGAYSNLD ELYVFNPKAI LPCFVVIYRG  420
F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11822KKKRR
21823KKKRRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016701790.10.0PREDICTED: uncharacterized protein LOC107916927
TrEMBLA0A1U8KH570.0A0A1U8KH57_GOSHI; uncharacterized protein LOC107916927
STRINGGorai.010G048000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-82C2H2-like zinc finger protein