PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G0388

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 484aa MW: 53463.1 Da PI: 6.0068

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G0388	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	344.8	1.5e-105	98	478	1	374
GRAS 1 lvelLlecAeavssgdle..laqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykal....ppsetseknsseelaalklfsevsPil 91 l++lL+++Aea++ ++++ la+ +L rl+el + +dg++m+Rlaa+fteAL+ l +s+ + k l p + +e+++++ laa++l++++sP++ Gh_D06G0388 98 LIHLLMAAAEALAGDNKSreLARVILVRLKELvSHNDGTNMERLAACFTEALHGLLEGSGGGHGKHLitngPHHNRDEHHHTDMLAAFQLLQDMSPYV 195 689*******998776569*******444566***************987666665521114444444559************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg..ppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 kf+h+taNqaIlea+ +++r+Hi+D+d+++G+QW++L+qaL sR++g +p+lRiT+++++ sg s +++etg+rL fA+++g pf+f+ ++ Gh_D06G0388 196 KFGHFTANQAILEATTHDRRIHIVDYDVMEGIQWASLMQALVSRKDGpqAPHLRITAISRSGSGrrSIGTIQETGRRLVAFAASIGQPFSFHQCRLDS 293 *****************************************662368*****888899999*********************9999 PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseer 282 e++++++L++ +gEal++n++l+l ++ + ++ ++L+ k+l+P++v++ve+e+ +++ F+ rf+++l++ysa++dslea++p ++++r Gh_D06G0388 294 DETFRPSALKLVRGEALIINCMLHLPHFSYRAPDSV---ASFLSGAKTLNPRLVTLVEEEVGPiGDGGFVGRFMDSLHHYSAVYDSLEAGFPMQNRAR 388 *************************985555555...59***************9988****************************** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374 vEr++lg++i +a + +e+ W+++l ++GFkpv++s + +qaklll ++ dgyrvee ++ lvlgWk+r+L+s+S W+ Gh_D06G0388 389 GLVERVFLGPRIAGSLARIYRT--GGEEESCGWSKWLATMGFKPVNVSFANHCQAKLLLGLFN-DGYRVEELaNNRLVLGWKSRRLLSASIWT 478 *************98876..8888899****************************.**97588999************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	51.487	72	458	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.1E-103	98	478	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MATDNAFEVD FYSNSTTTSI TDDSPACTWN HWGSPVVDWD SFSSDPDDFQ DLIESMMDDG 60 TGFELARVAH ETSNSVSTDT MVVDEETNGD EDSKGLRLIH LLMAAAEALA GDNKSRELAR 120 VILVRLKELV SHNDGTNMER LAACFTEALH GLLEGSGGGH GKHLITNGPH HNRDEHHHTD 180 MLAAFQLLQD MSPYVKFGHF TANQAILEAT THDRRIHIVD YDVMEGIQWA SLMQALVSRK 240 DGPQAPHLRI TAISRSGSGR RSIGTIQETG RRLVAFAASI GQPFSFHQCR LDSDETFRPS 300 ALKLVRGEAL IINCMLHLPH FSYRAPDSVA SFLSGAKTLN PRLVTLVEEE VGPIGDGGFV 360 GRFMDSLHHY SAVYDSLEAG FPMQNRARGL VERVFLGPRI AGSLARIYRT GGEEESCGWS 420 KWLATMGFKP VNVSFANHCQ AKLLLGLFND GYRVEELANN RLVLGWKSRR LLSASIWTSP 480 HSDL

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MATDNAFEVD FYSNSTTTSI TDDSPACTWN HWGSPVVDWD SFSSDPDDFQ DLIESMMDDG  60
TGFELARVAH ETSNSVSTDT MVVDEETNGD EDSKGLRLIH LLMAAAEALA GDNKSRELAR  120
VILVRLKELV SHNDGTNMER LAACFTEALH GLLEGSGGGH GKHLITNGPH HNRDEHHHTD  180
MLAAFQLLQD MSPYVKFGHF TANQAILEAT THDRRIHIVD YDVMEGIQWA SLMQALVSRK  240
DGPQAPHLRI TAISRSGSGR RSIGTIQETG RRLVAFAASI GQPFSFHQCR LDSDETFRPS  300
ALKLVRGEAL IINCMLHLPH FSYRAPDSVA SFLSGAKTLN PRLVTLVEEE VGPIGDGGFV  360
GRFMDSLHHY SAVYDSLEAG FPMQNRARGL VERVFLGPRI AGSLARIYRT GGEEESCGWS  420
KWLATMGFKP VNVSFANHCQ AKLLLGLFND GYRVEELANN RLVLGWKSRR LLSASIWTSP  480
HSDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-56	84	478	5	379	Protein SCARECROW
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269\|PubMed:15961668}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269\|PubMed:15961668}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269\|PubMed:15961668}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016682882.1	0.0	PREDICTED: nodulation-signaling pathway 2 protein-like
Swissprot	Q5NE24	0.0	NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBL	A0A2P5QMG2	0.0	A0A2P5QMG2_GOSBA; Uncharacterized protein
STRING	Gorai.010G048800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9914	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	1e-162	GRAS family protein

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513]