PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G0639

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 189aa MW: 21923.4 Da PI: 8.4836

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G0639	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.4	4.5e-12	67	155	1	81
EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvv 81 f+k+lt dv+++ +rl++ k +e+ +++ e+++ ++++d +g+++ ++l+ + ++ +vl++GW eF+ ++ L Df+ Gh_D06G0639 67 FEKQLTETDVNSKqCRLSINKVDVENAvmpllkeEEDVEKGIRVKVYDANGKEYPMTLKLWAHK-LHVLKEGWIEFCTDHALLaHQDFLK 155 89*****99888******7669996666899*************999997.689***********985667765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.3E-15	67	172	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.86E-14	67	171	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	6.2E-8	67	157	IPR003340	B3 DNA binding domain
CDD	cd10017	9.88E-13	67	157	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MEQKKAKKID HEEYKEIYGA ALCISSFKHL ILSPESAMNL QASLQATIDI PRVPSLNGLI 60 GRCSQPFEKQ LTETDVNSKQ CRLSINKVDV ENAVMPLLKE EEDVEKGIRV KVYDANGKEY 120 PMTLKLWAHK LHVLKEGWIE FCTDHALLAH QDFLKLWVFR NLHTQDLCFF ITSRRLQEFQ 180 PSKKRRLNA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448606.1	1e-139	PREDICTED: putative B3 domain-containing protein At4g03170
TrEMBL	A0A0D2U806	1e-138	A0A0D2U806_GOSRA; Uncharacterized protein
STRING	Gorai.010G075000.1	1e-139	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2103	18	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03170.1	4e-24	B3 family protein