PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0725
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 298aa    MW: 32998.1 Da    PI: 9.474
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0725genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.3e-19164197134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Gh_D06G0725 164 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 197
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.637158194IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-13158198No hitNo description
SMARTSM004018.2E-20158210IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-15162197IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.40E-11163191No hitNo description
PfamPF003204.6E-17164197IPR000679Zinc finger, GATA-type
PROSITE patternPS003440164189IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSSSNCYSSL YPFPFDLNED DQHQHHHLFT FKSQPSSSSS SSTVHHLAAG SCQREPQEFQ  60
DQAKIYVSKD GALENSDCGL KLSLWKKEER VESDHHHEDS STKWMPSKLR ILRKMMSSHH  120
TDLSKSSSPK IEDQKLQNQP SPSPDNSCNS SYNNDINNSP IRVCADCNTT KTPLWRSGPR  180
GPKSLCNACG IRQRKARRAM AAAAAATASN GTIVTAETTT SMKNKVQNKA KRSSNGCVAK  240
LKNKKCKLSS QPQGRNKLCF EDLRIILSKS SAFHGVFPQD EKEAAILLMA LSYGLVHG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016682481.10.0PREDICTED: GATA transcription factor 21-like
TrEMBLA0A1U8IWN60.0A0A1U8IWN6_GOSHI; GATA transcription factor 21-like
STRINGGorai.010G082800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21092675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.16e-31cytokinin-responsive gata factor 1