PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0761
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 219aa    MW: 23600.6 Da    PI: 10.0168
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0761genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.29.9e-3269125158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  d p+YVNaKQy++Il+RR  Rakle+++kl  ksrkpylheSRh hA++R+RgsgGrF
  Gh_D06G0761  69 DGPVYVNAKQYHGILRRRRYRAKLEAQNKL-VKSRKPYLHESRHLHAVNRARGSGGRF 125
                  57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.4E-3567128IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.50768128IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.7E-2771125IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.0E-237193IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607393IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.0E-23102125IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MKPINNPNTV FSPSNPNYNL SMASAQYPYA DVCIGGLFTP YGPPAIIQAQ MAGGSAPARL  60
PLPLDLAEDG PVYVNAKQYH GILRRRRYRA KLEAQNKLVK SRKPYLHESR HLHAVNRARG  120
SGGRFLSKKK LQQPHHPTSN PSSHSISDAS CLDRKNSGSE LESHLHVGGC SSSSTSCSDI  180
SSASNNNGSF QLRKHGFMDI SPGVSSMCNG LQNCASVGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-2269135268NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016682433.11e-160PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_016682434.11e-160PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_016682435.11e-160PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_016682436.11e-160PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_016682438.11e-160PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X3
TrEMBLA0A1U8IWJ31e-159A0A1U8IWJ3_GOSHI; nuclear transcription factor Y subunit A-3-like isoform X1
TrEMBLA0A1U8J1I01e-159A0A1U8J1I0_GOSHI; nuclear transcription factor Y subunit A-7-like isoform X3
STRINGGorai.010G086300.11e-156(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2440034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-34nuclear factor Y, subunit A7