PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0817
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 198aa    MW: 22011.5 Da    PI: 4.5855
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0817genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-181666155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s++kGVr +k +g+Wv+eIr p++   r r++lg++++ae+Aa+a +aa  +l+g
  Gh_D06G0817 16 SRFKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSAEKAARAFDAALFCLRG 66
                 789****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-201675IPR016177DNA-binding domain
CDDcd000181.85E-301676No hitNo description
PfamPF008478.4E-111666IPR001471AP2/ERF domain
SMARTSM003801.3E-321780IPR001471AP2/ERF domain
PROSITE profilePS5103222.0231774IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-291775IPR001471AP2/ERF domain
PRINTSPR003675.1E-91829IPR001471AP2/ERF domain
PRINTSPR003675.1E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MVKHISEKPA VERSDSRFKG VRKRKWGKWV SEIRLPNSRE RIWLGSYDSA EKAARAFDAA  60
LFCLRGRSAK FNFPDNPPEI AGARSLTRPQ IQAAAAQFAN SEPPRIQSEQ SNSGFQTESP  120
SPSVSDGTVQ LDSELPMDGS FLDLLTIGSG IYESDYGLIF PGFEDFSSDF LGSSLPNVGY  180
EEDYLDGILV PESFLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1516741372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KGVRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.36730.0leaf| ovule| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738601480.0
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6165261e-107JX616526.1 Gossypium hirsutum clone NBRI_GE61260 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016682358.11e-143PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC26e-59ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A1U8J1A61e-141A0A1U8J1A6_GOSHI; ethylene-responsive transcription factor ERF017-like
TrEMBLA0A2P5S2Q91e-141A0A2P5S2Q9_GOSBA; Uncharacterized protein
STRINGGorai.010G091100.11e-142(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-61ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]