PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0877
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 130aa    MW: 15483.4 Da    PI: 10.2645
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0877genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.57.1e-181153345
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                  ++   rq  +skR+ gilKKA+ELS+LCd+e  +++ s+tgk
  Gh_D06G0877 11 LKDMKARQAKYSKRKRGILKKAKELSILCDVELVLLLSSPTGK 53
                 677889***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.9E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.923161IPR002100Transcription factor, MADS-box
CDDcd001202.07E-19257No hitNo description
SuperFamilySSF554554.84E-22277IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-15323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-161256IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-153859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MGRKKLKIQR LKDMKARQAK YSKRKRGILK KAKELSILCD VELVLLLSSP TGKPTLFVGQ  60
NPNGLYNILQ KVSNMPFVER EERDLKNLEI IVYLNQIEFM EDYLIESLNE LRNMKVPFFF  120
LIYKYYDNKF
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448418.13e-49PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ7X9I04e-21AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A0D2U5P82e-70A0A0D2U5P8_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.010G096100.13e-71(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73301838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.17e-24AGAMOUS-like 94
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]