PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0919
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 276aa    MW: 30252.9 Da    PI: 9.8741
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0919genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.64.1e-19140173134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Gh_D06G0919 140 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 173
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.5E-20134185IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.02134170IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-13135174No hitNo description
Gene3DG3DSA:3.30.50.108.9E-16138174IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.27E-15139171No hitNo description
PROSITE patternPS003440140165IPR000679Zinc finger, GATA-type
PfamPF003206.7E-17140173IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MTPAFLNPPP SPNFPFVELK EEPHHLQLFL SVDKYEGGSS ASDQQASSSS SSSSLQSTVE  60
DQKATNGQNS SFGRNEERNY ESSAGDNKNG ITVKWMSSKI RLMKKMMNSN SNCSSSRRST  120
DHKFQYPVTG NGEANAIRVC SDCNTTTTPL WRSGPRGPKS LCNACGIRQR KARRAMEAAT  180
AAAENGAGVA TDAAIVMKFK VNNKEKKSRI GQFKKQQFKA QSDYNSPYSQ QSQKKLCFKE  240
LALSLSKNSA LQSVFPRDVE DAAILLMELS CGLIHS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452612.10.0PREDICTED: putative GATA transcription factor 22
TrEMBLA0A0D2R5E80.0A0A0D2R5E8_GOSRA; Uncharacterized protein
STRINGGorai.010G101100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16433713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.14e-22cytokinin-responsive gata factor 1