PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G1148
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 326aa    MW: 35623.4 Da    PI: 4.3618
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G1148genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.11.3e-15159215359
                  XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                   lkr rrk +NRe+ArrsR+RK+++++eLe  +++L +eN++L k+l +  +++  +
  Gh_D06G1148 159 HLKRLRRKLSNRESARRSRKRKQEQLAELEFQAEQLRGENDSLFKQLTNAHQLIRDV 215
                  58******************************************9999988887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.3E-11156208No hitNo description
SMARTSM003384.0E-14157221IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.955159205IPR004827Basic-leucine zipper domain
PfamPF001701.5E-12159211IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-11160211No hitNo description
CDDcd147022.32E-18162210No hitNo description
PROSITE patternPS000360164179IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MKRSASELAL EEFSRSTMST TTIPAPSAFP DFALHPPIAH LSNSFHFTEF SGDAAELSPQ  60
THVLLSQTLT SHLDSQSSFC GNESWGSTVC EGNNSNYRSR ENEVRGATTL SSDHDPSDDD  120
DDDVEEEDDD DDDDDDEGGE GGVEEADAGQ SEQSLDPSHL KRLRRKLSNR ESARRSRKRK  180
QEQLAELEFQ AEQLRGENDS LFKQLTNAHQ LIRDVGTNNR VLTSNVQALR HKVKLAEDML  240
AGGSFTCGLN QLVQSHLTSQ QPIATNNHNL GRVVNVSPTI TVQGDSSSYA GFTDMGNSPN  300
LGLPTLDFTN SNQNNIGIGG DAMSWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159166LKRLRRKL
2163179RRKLSNRESARRSRKRK
3173179RRSRKRK
4173180RRSRKRKQ
5175180SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.57550.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9641836e-97JX964183.1 Gossypium hirsutum clone NBRI_TRANS-452 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016683690.10.0PREDICTED: basic leucine zipper 9-like
TrEMBLA0A1U8J0290.0A0A1U8J029_GOSHI; basic leucine zipper 9-like
STRINGGorai.010G124200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63702641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.14e-39basic leucine zipper 9