PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G1203
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 96aa    MW: 10916 Da    PI: 10.6274
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G1203genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.24.3e-131764149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 k ien+  r +tfsk r gi KK +ELS LC+ e   iifs+tgk y +
  Gh_D06G1203 17 KIIENENDRLITFSKQRIGIYKKISELSNLCGGEF-FIIFSPTGKPYSF 64
                 579*******************************7.578*****98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-15967IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.208968IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-181077IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-91131IPR002100Transcription factor, MADS-box
PfamPF003194.9E-161964IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-93146IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MASSSKKTKG KQKIEIKIIE NENDRLITFS KQRIGIYKKI SELSNLCGGE FFIIFSPTGK  60
PYSFGHHSVE LSLNAFLTQA NLLMKPLMLL LRLTIR
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the final stages of embryo sac development. {ECO:0000269|PubMed:18713950}.
UniprotTISSUE SPECIFICITY: Expressed exclusively in the central cell of the female gametophyte and in early endosperm. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609592.11e-33PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ4PSU45e-18AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A0D2V9K46e-48A0A0D2V9K4_GOSRA; Uncharacterized protein
STRINGGorai.010G132200.11e-48(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-17AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]