PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G1312
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 932aa    MW: 102969 Da    PI: 6.0808
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G1312genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.63e-053323691254
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Gh_D06G1312 332 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 369
                  6678889999******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.992320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.75E-5330373No hitNo description
SuperFamilySSF474593.93E-11330382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-8334377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF138125.3E-4541584IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.161551585IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.7E-5553586IPR002885Pentatricopeptide repeat
PfamPF130419.5E-11586634IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.863586620IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.9E-6589622IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.0E-7597724IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137511.466621655IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.1E-6623657IPR002885Pentatricopeptide repeat
PfamPF130413.9E-15655704IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.496656690IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.3E-8658692IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.882691725IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.0E-7694727IPR002885Pentatricopeptide repeat
PfamPF128541.2E-10721752IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.832726756IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.6E-6728752IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.81757790IPR002885Pentatricopeptide repeat
PfamPF130411.5E-12791839IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.306791825IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.0E-7794882IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137511.619826860IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.2E-8828853IPR002885Pentatricopeptide repeat
PfamPF128545.7E-6860883IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.057861894IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.4E-6863895IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 932 aa     Download sequence    Send to blast
MAEEFHAGIC RGTWWNSTKP MLTGCSLPPS TELVDMGNLG YDTDMVDIRA RTRYYEESTK  60
NPVYGVSSTV FQGHPHHQAD SDSGVTSSSL LIDSTLQMMG FGLPSSTTSD WNLSLLRSNG  120
RTEFYNSILQ EDIDSRLNHR QETGMGSAQI LNYWSPKSYS GPGKDSSITV FEPIDQDISL  180
NSVTSSGNST PTCQGLSARF PMASSSYGYP STLLHSLFQS DPQTSEQQSL FNNRSINYMS  240
SAKSSWPKQQ PSSLRFSNNT PFWNASATGI NDVKTGFLPS PASQFLVQTF EEKANCPSST  300
TKTNSTEVGK SASGMKRPKL ESPSPLPTFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH  360
EAIEYIKFLH DQVNVLSTPY MKQAVDSIQQ ENIDNLKDPD EPKQDLKSRG LCLVPISSTF  420
SVTNETTADI WTPTFGGTLS GSQRAAAPQL RSCFYGFFII LIDKERLKGG KKNTRKLLLP  480
ASLPISLFYP PSLPDPLPNH FRRPFSSSGL NYIEGSTTNF PSLILSIKIG KPEVAVRFFE  540
NCMNSGALKP NVVTYTALLS SFNLLGKFDE GCELVYSMKK EGLALDAILY SCWILGYFRN  600
GCLMEALRKY REMVERGINP DTVSYTVLID GFSKEGSVGK VVGFLKKMLK DGVMPNVITY  660
TAIMLGFCKE GKFEKAFRLF KEVQDMGIEV DEFMYATLID GACRKGDFDC VFHLLDGMEK  720
KGIKPSVVTY NIVINGLCKV GRTSEADNVF KEVAGDIITY STLLYGYTEE GNIKGIIKTK  780
EKLEKSGLCM DVVACNILIK AFFMVGAFED ARALYQAMPE MDLNADSITY CTMIDGYCKV  840
GRIEEALEVF DEYRVSLVSS VACYNCIISG LCKQGMVDMA IQVIIELGEK GFILDMGISM  900
MLIRAAFSQM GAVGVMNFVS YLGFKGDLLF LI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A2e-7952889211446pentatricopeptide repeat protein dPPR-U10
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1472302e-56EF147230.1 Populus trichocarpa clone WS01229_K02 unknown mRNA.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.16e-64bHLH family protein